 GAGA_bindGAGA binding protein-like family | |
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| SMART ACC: | SM001226 |
| Description: | This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA (PUBMED:12177492). It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain. |
| InterPro ACC: | IPR010409 |
| InterPro abstract: | This family includes GAGA-binding protein protein (gbp) from Soybean that binds to GAGA element dinucleotide repeat DNA [ PUBMED:12177492 ]. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be … expand |
| Family alignment: | View the Family alignment or the Alignment consensus sequence |
| There are 738 GAGA_bind domains in 737 proteins in SMART's NRDB database. | |
Taxonomic distribution of proteins containing GAGA_bind domains
The tree below includes only several representative species and genera. The complete taxonomic breakdown of all proteins containing GAGA_bind domains can be accessed here. Click the counts or percentage values to display the corresponding proteins.
Predicted cellular role
| Binding / catalysis: | May be a zinc-binding DNA interaction domain. |
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KEGG pathways involving proteins which contain this domain
This information is based on the mapping of SMART genomic protein database to KEGG orthologous groups. Percentages are related to the number of proteins containing a GAGA_bind domain which could be assigned to a KEGG orthologous group, and not all proteins containing GAGA_bind domains. Please note that proteins can be included in multiple pathways, ie. the numbers below will not add to 100%.