The domain within your query sequence starts at position 189 and ends at position 331; the E-value for the Prp18 domain shown below is 3.1e-66.
TKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLPADIKE SITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLND ETQRKYIQGLKRLMTICQKHFPT
Prp18 |
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PFAM accession number: | PF02840 |
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Interpro abstract (IPR004098): | The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known [ (PUBMED:10737784) ]. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [ (PUBMED:10737784) ]. |
GO process: | RNA splicing (GO:0008380) |
GO component: | spliceosomal complex (GO:0005681) |
This is a PFAM domain. For full annotation and more information, please see the PFAM entry Prp18