Domains within Arabidopsis thaliana protein RL40A_ARATH (B9DHA6)
Ubiquitin-60S ribosomal protein L40-1
Alternative representations: 1 /
| Protein length | 128 aa |
|---|---|
| Source database | UniProt |
| Identifiers | P19232, R0FQS3_9BRAS, R0FQS3, A0A1J3IXF0_NOCCA, A0A1J3IXF0, A0A1J3INF7_NOCCA, A0A1J3INF7, RL40B_ARATH, Q42202, A0A178W3S3_ARATH, A0A178W3S3, A0A1J3ERN9_NOCCA, A0A1J3ERN9, A0A087H310_ARAAL, A0A087H310, A0A178VD86_ARATH, A0A178VD86, RL40A_ARATH, B9DHA6 |
Domain architecture analysis
Display all proteins with similar:
| Domain organisation | Proteins having all the domains as the query in the same order. Additional domains are allowed. |
|---|---|
| Domain composition | Proteins with the same domain composition have at least one copy of each of the domains of the query. |
Predicted functional partners
RL40A_ARATH is shown as 
RPL40A in the network
Click and drag to pan the network, and zoom by using your mouse wheel. Click the protein nodes for additional options.
The network on the left comes from STRING, a database of known and predicted protein interactions. Displayed here is the evidence view, where different line colors represent the types of evidence for the association.
Protein RL40A_ARATH is possibly involved in these pathways, based on its similarity to the listed KEGG orthologous groups:
Post-translational modifications
PTM annotation is taken from PTMcode, a resource of known and predicted functional associations between protein post-translational modifications (PTMs). There are 52 PTMs annotated in this protein:
| PTM | Count | |
|---|---|---|
 | Acetylation | 18 |
 | Ubiquitination | 14 |
 | Phosphorylation | 12 |
 | Nitrosylation | 2 |
 | Methylation | 2 |
 | SUMOylation | 2 |
 | Isopeptide bond | 2 |
To see the full details, including possible functional associations between the PTMs, please visit the PTMcode annotation page for protein AT2G36170.
Orthologous groups
Orthology information is taken from eggNOG, a database of orthologous groups of genes. Orthologous groups containing this protein are listed below. This protein is named 3702.B9DHA6 in eggNOG.
| OG | Taxonomic class | Description |
|---|---|---|
| LKOG0003 | All organisms (root) | ubiquitin-large subunit ribosomal protein L40e,RNA polymerase I-specific transcription initiation factor RRN7,ubiquitin-small subunit ribosomal protein S27Ae |
| KOG0003 | Eukaryota (superkingdom) | ubiquitin-large subunit ribosomal protein L40e,RNA polymerase I-specific transcription initiation factor RRN7,ubiquitin-small subunit ribosomal protein S27Ae |
| G0BWE | Viridiplantae (kingdom) | ubiquitin-large subunit ribosomal protein L40e |
| GEXHX | Streptophyta (phylum) | ubiquitin-large subunit ribosomal protein L40e |
| C985A | Streptophytina (subphylum) | ubiquitin-large subunit ribosomal protein L40e |
| DHDIB | Magnoliopsida (class) | ubiquitin-large subunit ribosomal protein L40e |
| 7SW9W | Brassicaceae (family) | ubiquitin-large subunit ribosomal protein L40e |
| 9AZKS | Camelineae (tribe) | ubiquitin-large subunit ribosomal protein L40e |
The SMART diagram above represents a summary of the results shown below. Domains with scores less significant than established cutoffs are not shown in the diagram. Features are also not shown when two or more occupy the same piece of sequence; the priority for display is given by SMART > PFAM > PROSPERO repeats > Signal peptide > Transmembrane > Coiled coil > Low complexity. In either case, features not shown in the above diagram are listed in the right side table below, and the reason for their omission is shown in the 'Reason' column.