Domains within Rattus norvegicus protein F1LX08_RAT (F1LX08)
Sodium channel protein
Alternative representations: 1 /
| Protein length | 1951 aa |
|---|---|
| Source database | UniProt |
| Identifiers | F1LX08_RAT, F1LX08, ENSRNOP00000006646.7, ENSRNOP00000006646, ENSRNOP00000072091.1, ENSRNOP00000072091 |
| Source gene | ENSRNOG00000005007 |
Domain architecture analysis
Display all proteins with similar:
| Domain organisation | Proteins having all the domains as the query in the same order. Additional domains are allowed. |
|---|---|
| Domain composition | Proteins with the same domain composition have at least one copy of each of the domains of the query. |
This domain architecture was probably invented with the emergence of cellular organisms
Predicted functional partners
F1LX08_RAT is shown as 
Scn3a in the network
Click and drag to pan the network, and zoom by using your mouse wheel. Click the protein nodes for additional options.
The network on the left comes from STRING, a database of known and predicted protein interactions. Displayed here is the evidence view, where different line colors represent the types of evidence for the association.
Protein F1LX08_RAT is possibly involved in these pathways, based on its similarity to the listed KEGG orthologous groups:
Orthologous groups
Orthology information is taken from eggNOG, a database of orthologous groups of genes. Orthologous groups containing this protein are listed below. This protein is named 10116.ENSRNOP00000006646 in eggNOG.
| OG | Taxonomic class | Description |
|---|---|---|
| LKOG2301 | All organisms (root) | voltage-gated sodium channel type II alpha,tetratricopeptide repeat protein 21B,sodium leak channel non-selective protein |
| KOG2301 | Eukaryota (superkingdom) | voltage-gated sodium channel type II alpha,tetratricopeptide repeat protein 21B,sodium leak channel non-selective protein |
| HUDKQ | Metazoa (kingdom) | voltage-gated sodium channel type II alpha,voltage-dependent calcium channel L type alpha-1D,voltage-dependent calcium channel N type alpha-1B |
| 93EKH | Chordata (phylum) | voltage-gated sodium channel type II alpha,voltage-gated sodium channel type VIII alpha,voltage-gated sodium channel type IV alpha |
| 5R9VR | Sarcopterygii (superclass) | voltage-gated sodium channel type II alpha,voltage-gated sodium channel type I alpha,voltage-gated sodium channel type III alpha |
| 8Z403 | Mammalia (class) | voltage-gated sodium channel type II alpha,voltage-gated sodium channel type IX alpha,voltage-gated sodium channel type III alpha |
| 4RIZD | Euarchontoglires (superorder) | voltage-gated sodium channel type III alpha |
| AI4P6 | Rodentia (order) | voltage-gated sodium channel type III alpha |
| 8DKEV | Myomorpha (suborder) | voltage-gated sodium channel type III alpha |
| 9FS4J | Vertebrata (clade) | voltage-gated sodium channel type II alpha,voltage-gated sodium channel type VIII alpha,voltage-gated sodium channel type V alpha |
| 7J97S | Opisthokonta (clade) | voltage-gated sodium channel type II alpha,sodium leak channel non-selective protein,voltage-dependent calcium channel L type alpha-1D |
| H43EG | Bilateria (clade) | voltage-gated sodium channel type II alpha,voltage-dependent calcium channel L type alpha-1D,voltage-dependent calcium channel N type alpha-1B |
| CQ5G8 | Muridae (family) | voltage-gated sodium channel type III alpha |
| ADXNY | Murinae (subfamily) | voltage-gated sodium channel type III alpha |
The SMART diagram above represents a summary of the results shown below. Domains with scores less significant than established cutoffs are not shown in the diagram. Features are also not shown when two or more occupy the same piece of sequence; the priority for display is given by SMART > PFAM > PROSPERO repeats > Signal peptide > Transmembrane > Coiled coil > Low complexity. In either case, features not shown in the above diagram are listed in the right side table below, and the reason for their omission is shown in the 'Reason' column.