This domain is structurally very similar to the creatinase N-terminal domain. However, little or no sequence similarity exists between the two families.
This entry represents the N-terminal domain of aminopeptidase P (X-Pro aminopeptidase I,II and III EC 3.4.11.9 ) and related sequences belonging to the peptidase M24B family. The domain is structurally very similar [ (PUBMED:9520390) ] to the creatinase N-terminal domain ( IPR000587 ).
Structure and mechanism of a proline-specific aminopeptidase fromEscherichia coli.
Proc Natl Acad Sci U S A. 1998; 95: 3472-7
Display abstract
The structure of the proline-specific aminopeptidase (EC 3.4.11.9) fromEscherichia coli has been solved and refined for crystals of the nativeenzyme at a 2.0-A resolution, for a dipeptide-inhibited complex at 2.3-Aresolution, and for a low-pH inactive form at 2.7-A resolution. Theprotein crystallizes as a tetramer, more correctly a dimer of dimers, atboth high and low pH, consistent with observations from analyticalultracentrifuge studies that show that the protein is a tetramer underphysiological conditions. The monomer folds into two domains. The activesite, in the larger C-terminal domain, contains a dinuclear manganesecenter in which a bridging water molecule or hydroxide ion appears poisedto act as the nucleophile in the attack on the scissile peptide bond ofXaa-Pro. The metal-binding residues are located in a single subunit, butthe residues surrounding the active site are contributed by threesubunits. The fold of the protein resembles that of creatineamidinohydrolase (creatinase, not a metalloenzyme). The C-terminalcatalytic domain is also similar to the single-domain enzyme methionineaminopeptidase that has a dinuclear cobalt center.