BTD

BTD

Beta-trefoil DNA-binding domain
SMART ACC:SM001268
Description:Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) (PUBMED:15297877).
InterPro ACC:IPR015350
InterPro abstract:

This DNA-binding domain adopts a β-trefoil fold, that is, a capped β-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) [ PUBMED:15297877 ].

GO process:regulation of transcription by RNA polymerase II (GO:0006357)
GO function:RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978)
Family alignment:View the Family alignment or the Alignment consensus sequence
There are 1 505 BTD domains in 1 502 proteins in SMART's NRDB database.

Taxonomic distribution of proteins containing BTD domains

The tree below includes only several representative species and genera. The complete taxonomic breakdown of all proteins containing BTD domains can be accessed here. Click the counts or percentage values to display the corresponding proteins.

Relevant references for this domain

Primary literature for the BTD domain is listed below. Automatically-derived, secondary literature is also available.

KEGG pathways involving proteins which contain this domain

This information is based on the mapping of SMART genomic protein database to KEGG orthologous groups. Percentages are related to the number of proteins containing a BTD domain which could be assigned to a KEGG orthologous group, and not all proteins containing BTD domains. Please note that proteins can be included in multiple pathways, ie. the numbers below will not add to 100%.

KEGG pathways

Some of these pathways are included in the interactive Pathways Explorer overview maps. Select an overview map and click the button below to highlight them in iPath.

KEGG orthologous groups

Some of these KOs are included in the interactive Pathways Explorer overview maps. Select an overview map and click the button below to highlight them in iPath.

3D structures in PDB containing this domain

Links to other resources describing this domain

InterProIPR015350
PfamBTD