CA12_BOVIN/1-2 -----------------------------------------------------------T CONSENSUS/80% ..th.tsltpltt...pIcthhpP.Gop.ppPARoCcDLhhscsph.sG.YWlDPN.Gsh CONSENSUS/65% ..ph.uoltslpp...pIEphhpPpGop.psPARoC+DLhhsasphpsG.YWlDPNtGsh CONSENSUS/50% csElhuoLsSlss...pIEsl+oPsGo+.csPARoC+DLpLCHP-hpsGpYWlDPNQGCs CA12_BOVIN/1-2 LDAMKVFCNMET----GETCVYPNPASVPKKNWWSSKS-KDKKHIWFGETINGGFHFSYG CONSENSUS/80% hDAhcVaCshps....tpTCl.sp.tph..t.W..scs.......has.php.G.phsY. CONSENSUS/65% tDAh+VaCshps....spTClpss.splstpsWa.ucs.....thWaupphp.GhpFoYs CONSENSUS/50% tDAIKVaCNhcT....GETCVoPsssslspKsWasuKS...pt+lWFu-sMssGppFSYs CA12_BOVIN/1-2 DDNLAPNTADVQMTFLRLLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIR CONSENSUS/80% stp.......sQhsFLRLLSspApQslTYhC+NShu.........ctAlhh.sus-hElp CONSENSUS/65% ssp.......sQhsFLRLLSscApQslTY+CKNSluh.sttstshcpAlhhhuos-hElp CONSENSUS/50% Dus.ss.ss.VQLTFLRLLSocAsQNITYHCKNSlAYhDptsGNlcKAllLpGSNDlEls CA12_BOVIN/1-2 AEGNSRFTYTVLK-DGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDI CONSENSUS/80% s-...p.hathl..DGCpp+pu..s+TlhEhcTp+sppLPIlDhAs.DlGu.sQcFGlcl CONSENSUS/65% s-..s+hpYtll..DGCpp+suphsKTVhEacTp+spRLPIlDlAP.DlGGscQcFGl-l CONSENSUS/50% AEuso+FpYpVLp.DGCs++sGphuKTVlEY+TpKssRLPIlDIAPsDIGGsDQEFGl-l CA12_BOVIN/1-2 GPVCFL CONSENSUS/80% GPVCF. CONSENSUS/65% GPVCFh CONSENSUS/50% GPVCFh
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |