CAB66795/387-479 QDLDCYTTVAQLCPFEKPATHCPRIHCPAHCKDEPSYWAPVFGTN--IYAD--TSSICKT CONSENSUS/80% ..lsC.sphhphp...c.ts....h.CPusC...t...hpVhGsh..hYts .SSlCtA CONSENSUS/65% ..lsC.o+shclp...Ksssp...lhCPAGC..tp...hpVaGoh..lYts hSSlCtA CONSENSUS/50% psVoC-T+utDls...KssocssRVpCPAGChLsc...AcVaGTl..lYAS lSSIC+A CAB66795/387-479 AVHA-GVISNESGGDVDVMPVDKKKTYVGSLRNGVQSE CONSENSUS/80% AlHt GllsN..GG.VcVh..sthp.a.us.tNGlpS. CONSENSUS/65% AlHt GVlsN..GG.VcVhp.stppsY.uS.tNGlQS. CONSENSUS/50% AVHu GVIsNpSGGsVcVhslsG+csYluScuNGIQSp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |