5306.JGI65034_from_73_to_194IQTPEFTQL---------------------SDDA--LVGGRFRPRNSDEELVD------- CONSENSUS/80% l.hPpW+.h........................s............tpp.hEs....... CONSENSUS/65% l.sPpWR.h.....................slps........t.ppppcthEs....... CONSENSUS/50% IlTPsWRsl.....................slss........ptsp-c--lED....... 5306.JGI65034_from_73_to_194------------TSDAAYEKRHRKYETFEKRQRL----REKEKLKHEQYKLKERIEQLRA CONSENSUS/80% ............lsDtsa.hRHthh..pEppR......h..php..+t..p.ttht.... CONSENSUS/65% ............loDpsa.tRHp+hEhcEpcR......tphphpt.Rp.pp.pphpp... CONSENSUS/50% ............LSD-sFscRHpKhEc-E++Ra..h.pp+hcpRpsRpp+ps-shpppp. 5306.JGI65034_from_73_to_194MDAAAFLALPASS----------------FSEPP-GVPHQDVYEEDPDLAH--ANGPD-- CONSENSUS/80% ...t.t.....ps......................t....th.st..s.....tp..... CONSENSUS/65% ...tsps...tss..............s.hspst.s.ts.phssp..s.sh..tpsh... CONSENSUS/50% ...ssssspsssP...........ttsoahPsPp.sspulslssplPlssh..ucshs.. 5306.JGI65034_from_73_to_194SHNEGERRREEMLEVAEALEERYRV CONSENSUS/80% ..ttpp..................h CONSENSUS/65% .hssppt..............shsW CONSENSUS/50% phsspcp.............hshPW
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |