NUC_STAHY/1-132 NEQTYKVIRVIDGDTIIVDKDG----------------------KQQNLRMIGVDTPETV CONSENSUS/80% t...shl..lhsGsph.hhh..........................hpl.l.slcsPc.t CONSENSUS/65% pphtuhV.pVhsGDslplhhts......................t.hplpLsulcsPcpt CONSENSUS/50% cchsutVs+VlDGDTlclhhss.....................tpphpl+LuGIDsPEss NUC_STAHY/1-132 KPNTP----------------VQPYGKEASDFTKRHL-TNQKVRLEYDK---------QE CONSENSUS/80% ........................au.cApphhpphl.htppl.l.h............. CONSENSUS/65% p.s.t.................psautcAppFhcphl.ht+pVplph.t........... CONSENSUS/50% ctsps................spPFGpEA+-FL+cpL.ls+cVplpl-s........... NUC_STAHY/1-132 KDRYGR-TLAYVWLGKEM---------FNEKLAKEGLARAKFYRPNYKYQE--------- CONSENSUS/80% .s..sp.hhu.lhhstt..........ls..hlppGhAhsh....t.............. CONSENSUS/65% pcp.GR.hluhlhhssts.........lsttLlcpGhAhshthttpst..t......... CONSENSUS/50% pD+YGR.hlGsVahssss.........luctLV+cGLApVhctpssssspp......... NUC_STAHY/1-132 ----RIEQAQKQAQKLKKNIWSN CONSENSUS/80% .....h.thpttApptphslWtp CONSENSUS/65% ....pLhpsEppA+pp+hGlWss CONSENSUS/50% ...ppLtpAEcpAKcs++GlWus
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |