cov pid 1 [ . . . . : . . . 80 1 6459294/1-223 100.0% 100.0% MPRHFGAVPGVVPGMAFVNRQELRDAGVHLPTQAGISGSA--------SEGADSIVLSGGYEDDRDEGDVILYTGEGGRD 2 5903099/51-256 98.7% 35.2% MKKRVGTVPGIEVGDIFFSRIEMCLVGLHMQTMAGIDYIISK-AGSDEESLATSIVSSGRYEGEAQDPESLIYSGQGGNA 3 2459412/50-257 98.7% 42.8% DKHIVGPVTGVEVGDIFFYRMELCVLGLHGQTQAGIDCLTAE-RSATGEPIATSIVVSGGYEDDEDTGDVLVYTGHGGQD 4 4678372/50-256 98.7% 41.5% DKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGS-LSSNGEPIATSVIVSGGYEDDDDQGDVIMYTGQGGQD 5 3668088/46-250 100.0% 40.0% GTQIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKD----DGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNV 6 4314371/46-251 99.3% 38.0% GVHILGEVPGVEVGDEFQYRMELNILGIHKPSQAGIDYMK-----YGKAKVATSIVASGGYDDHLDNSDVLTYTGQGGNV 7 3377817/57-254 95.4% 33.8% AEHDPVRNQGVLVGESWENRVECRQWGVHLPHVSCIAGQE--------DYGAQSVVISGGYKDDEDHGEWFLYTGRSRG- 8 4220590/48-271 100.0% 38.4% PANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRS--------NDGAYSLVLAGGYEDDVDNGNYFTYTGSGGRD 9 4646233 78.3% 32.8% ----------------------MCLVGLHRNTAGGIDSLLAK-ESGVDGPAATSVVTSGKYDNETEDLETLIYSGHGGK- 10 4006825 84.2% 26.8% ----------------------MGLVGLHSGTIDMEFIGVEDHGDEEGKQIAVSVISSGKNADKTEDPDSLIFTGFGGTD consensus/100% ......................ht..GlH....sh.............t.hA.Sll.uGt.ts..pp.p.hhaoG.utt. consensus/90% ......................hp.hGlHh.p.usIth..........t.hA.Sll.SGtYpsc.-ps-.hhYoGpGGp. consensus/80% ..p..s...Gl.sG..a..R.phs.hGlHh.s.uGIshhh........p.hAsSlV.SGtYcDc.-ps-slhYTGpGGps consensus/70% ..phhG.lsGV.VGp.a..RhEhslhGlHtso.uGIchht.......tp.hAsSlVsSGGY-D-tDsu-sllYTGpGGps cov pid 81 . 1 . . . . : . 160 1 6459294/1-223 100.0% 100.0% P------LTGHQVKPQQLVRGNLALAISHRDGL--------------PLRVTRGHR--HSSQFSPQSGYQYAGLYRVDDH 2 5903099/51-256 98.7% 35.2% D-------KNRQASDQKLERGNLALENSLRKGN--------------GVRVVRGEE---DAASKTGKIYIYDGLYSISES 3 2459412/50-257 98.7% 42.8% H-------QHKQCDNQRLVGGNLGMERSMHYGI--------------EVRVIRGIK---YENSISSKVYVYDGLYKIVDW 4 4678372/50-256 98.7% 41.5% R-------LGRQAEHQRLEGGNLAMERSMYYGI--------------EVRVIRGLK---YENEVSSRVYVYDGLFRIVDS 5 3668088/46-250 100.0% 40.0% G----KKKNNEPPKDQQLVTGNLALKNSINKKN--------------PVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEY 6 4314371/46-251 99.3% 38.0% MQVKKKGEELKEPEDQKLITGNLALATSIEKQT--------------PVRVIRGKHKSTHDKSKGG-NYVYDGLYLVEKY 7 3377817/57-254 95.4% 33.8% --------RHFANEDQEFEDLNEALRVSCEMGY--------------PVRVVRSYKDR-YSAYAPKEGVRYDGVYRIEKC 8 4220590/48-271 100.0% 38.4% LS--GNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKY 9 4646233 78.3% 32.8% ------------PCDQVLQRGNRALEASVRRRN--------------EVRVIRGEL------YNNEKVYIYDGLYLVSDC 10 4006825 84.2% 26.8% M-------YHGQPCNQKLERLNIPLEAAFRKKS--------------IVRVVRCMK---DEKRTNGNIYIYDGTYMITNR consensus/100% ............sp.Q.h.t.N.sht.sh...................lRVhRs..........st....YsGha.l.p. consensus/90% ............spsQpL.thNhuht.uhp.t................VRVlRs.c....tt..stp.hhYDGlYhl.c. consensus/80% .........tttspsQpL.psNhALthShcht................VRVlRuh+....pt.hstpsYhYDGlYhl.ch consensus/70% ........pttpspcQcL.pGNlALctShcpt................VRVlRGh+....pp.ssucsYlYDGLYhlsch cov pid 161 . . ] 183 1 6459294/1-223 100.0% 100.0% WREVGRS-GFLIWRFRLTRLENQ 2 5903099/51-256 98.7% 35.2% WVEKGKS-GCNTFKYKLVRQPGQ 3 2459412/50-257 98.7% 42.8% WFAVGKS-GFGVFKFRLVRIEGQ 4 4678372/50-256 98.7% 41.5% WFDVGKS-GFGVFKYRLERIEGQ 5 3668088/46-250 100.0% 40.0% WEETGSH-GKLVFKFKLRRIPGQ 6 4314371/46-251 99.3% 38.0% WQQVGSH-GMNVFKFQLRRIPGQ 7 3377817/57-254 95.4% 33.8% WRKARFP----VCRYLFVRCDNE 8 4220590/48-271 100.0% 38.4% WPERGKS-GFLVWRYLLRRDDTE 9 4646233 78.3% 32.8% WQVTGKS-GFKEYRFKLLRKPGQ 10 4006825 84.2% 26.8% WEEEGQN-GFIVFKFKLVREPDQ consensus/100% W...t.......h+a.h.R..sp consensus/90% W.thGpp.Gh.ha+ahLhR..sp consensus/80% W.phGps.Gh.la+apLhR..sQ consensus/70% W.csGps.GhhVa+a+LhRhssQ