CLN8_Hs VFWDLAATRAVFGVQSTAAGLWALLGDP---VLHA------------DKARGQQNWCWFH CONSENSUS/80% .ph.p...phh.hh.uhhhshhhhh.........p........................h CONSENSUS/65% p+hhc.s.chl.hhpuhhhuhhshhs......h.s.h.hh........shphhs..hhhh CONSENSUS/50% pKhpEsut+hlaalpuhlsulhslhsps...hhpcsppha.t.....hPtpshssttphh CLN8_Hs ITTATGFFCFENVAVH-LSNLIFRTF---------------------------------- CONSENSUS/80% hhhthuaah..hh.hh...phh...................................... CONSENSUS/65% hhhphuaahhslhthh...chht..................................... CONSENSUS/50% YhhslGYalaslhslh.hpcl++p-................................... CLN8_Hs ------------------------DLFLVIHHLFAFLGFLGCLVNLQAGHYLAM--TTLL CONSENSUS/80% .........................h..hhHHhhshhhhhhshh..h.hhh.h...hhhl CONSENSUS/65% ........................hh.hlhHHhhslhhhshuhhhshhthssh...lhhl CONSENSUS/50% ........................hhphllHHllolhllshuassshspsGsl...lllL CLN8_Hs LEMSTPFTCVSWMLLKAG----------WSESLFWKLNQWLMIHMFHCRMVLTYHMWWVC CONSENSUS/80% h-hss.hhphthhh.h.t..............hh.h.hhhhhh.ahhhRhhhh.hhhhh. CONSENSUS/65% t-hoshhlphtphhphts............pthhphhhhhhhhsahhsRlhhhshhhhhs CONSENSUS/50% a-sS-saLcls+llpass...........hpphsssshllaslsFllsRLlhhsahllps CLN8_Hs FWHWDGLVSSL-------------------------------YLPHLTLFLVGLALLTLI CONSENSUS/80% hh..............................................hhh.hhhhhh.h CONSENSUS/65% hhhhshhh......................................hhhhhhshhhhLth CONSENSUS/50% shthsththt..................................hhhhhhhssllhsLtl CLN8_Hs INPYWTHKKTQQLLNPVD CONSENSUS/80% hphhWhhhhhphhhh.h. CONSENSUS/65% hplhWhhhhhphhhphhp CONSENSUS/50% lplaWhhhll+hst+tlp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |