MHC_II_betaClass II histocompatibility antigen, beta domain | |
|---|---|
| SMART ACC: | SM000921 |
| Description: | Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) (PUBMED:15120183). |
| InterPro ACC: | IPR000353 |
| InterPro abstract: | This entry represents the N-terminal domain (also called beta-1 domain) of the beta chain of class II MHC glycoproteins from vertebrates. Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups … expand |
| GO process: | immune response (GO:0006955), antigen processing and presentation (GO:0019882) |
| GO component: | membrane (GO:0016020), MHC class II protein complex (GO:0042613) |
| Family alignment: | View the Family alignment or the Alignment consensus sequence |
| There are 14 509 MHC_II_beta domains in 14 487 proteins in SMART's NRDB database. | |
Taxonomic distribution of proteins containing MHC_II_beta domains
The tree below includes only several representative species and genera. The complete taxonomic breakdown of all proteins containing MHC_II_beta domains can be accessed here. Click the counts or percentage values to display the corresponding proteins.
Predicted cellular role
| Cellular role: | Interaction (with the environment) |
|---|
Relevant references for this domain
Primary literature for the MHC_II_beta domain is listed below. Automatically-derived, secondary literature is also available.
KEGG pathways involving proteins which contain this domain
This information is based on the mapping of SMART genomic protein database to KEGG orthologous groups. Percentages are related to the number of proteins containing a MHC_II_beta domain which could be assigned to a KEGG orthologous group, and not all proteins containing MHC_II_beta domains. Please note that proteins can be included in multiple pathways, ie. the numbers below will not add to 100%.
KEGG pathways
KEGG orthologous groups
3D structures in PDB containing this domain
Links to other resources describing this domain
| Pfam | MHC_II_beta |
|---|---|
| InterPro | IPR000353 |