PBPeEukaryotic homologues of bacterial periplasmic substrate binding proteins. | |
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| SMART ACC: | SM000079 |
| Description: | Prokaryotic homologues are represented by a separate alignment: PBPb |
| InterPro ACC: | IPR001320 |
| InterPro abstract: | There are three classes of ionotropic glutamate receptors (iGluRs), namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission … expand |
| GO component: | membrane (GO:0016020) |
| GO function: | ligand-gated monoatomic ion channel activity (GO:0015276) |
| Family alignment: | View the Family alignment or the Alignment consensus sequence |
| There are 11 693 PBPe domains in 11 580 proteins in SMART's NRDB database. | |
Taxonomic distribution of proteins containing PBPe domains
The tree below includes only several representative species and genera. The complete taxonomic breakdown of all proteins containing PBPe domains can be accessed here. Click the counts or percentage values to display the corresponding proteins.
KEGG pathways involving proteins which contain this domain
This information is based on the mapping of SMART genomic protein database to KEGG orthologous groups. Percentages are related to the number of proteins containing a PBPe domain which could be assigned to a KEGG orthologous group, and not all proteins containing PBPe domains. Please note that proteins can be included in multiple pathways, ie. the numbers below will not add to 100%.
KEGG pathways
KEGG orthologous groups
3D structures in PDB containing this domain
Links to other resources describing this domain
| InterPro | IPR001320 |
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