LsmAD

LsmAD

SMART ACC:SM001272
Description:This domain is found associated with Lsm domain PMID:16115810.
InterPro ACC:IPR009604
InterPro abstract:

This domain can be found in eukaryotic ataxin-2 [ PUBMED:16115810 ]. Ataxin-2 is predicted to consist of mostly non-globular domains [ PUBMED:9462862 ]. This domain has been shown to interact with RNA helicase DDX6 [ PUBMED:17392519 expand

Family alignment:View the Family alignment or the Alignment consensus sequence
There are 2 461 LsmAD domains in 2 455 proteins in SMART's NRDB database.

Taxonomic distribution of proteins containing LsmAD domains

The tree below includes only several representative species and genera. The complete taxonomic breakdown of all proteins containing LsmAD domains can be accessed here. Click the counts or percentage values to display the corresponding proteins.

Relevant references for this domain

Primary literature for the LsmAD domain is listed below. Automatically-derived, secondary literature is also available.

KEGG pathways involving proteins which contain this domain

This information is based on the mapping of SMART genomic protein database to KEGG orthologous groups. Percentages are related to the number of proteins containing a LsmAD domain which could be assigned to a KEGG orthologous group, and not all proteins containing LsmAD domains. Please note that proteins can be included in multiple pathways, ie. the numbers below will not add to 100%.

KEGG pathways

Some of these pathways are included in the interactive Pathways Explorer overview maps. Select an overview map and click the button below to highlight them in iPath.

KEGG orthologous groups

Some of these KOs are included in the interactive Pathways Explorer overview maps. Select an overview map and click the button below to highlight them in iPath.

Links to other resources describing this domain

PfamLsmAD
InterProIPR009604