6239.C13D9.4_from_19_to_274LFFGAIGNVLFIHLTFKRKSLQTRTSALQCVQCVFHIICQVGTMFDGNIT-LGN------ CONSENSUS/80% .hhGhhGNh.hlhhhhppppLpo.sthL.sh.shhchhp.h..h..hh...h........ CONSENSUS/65% hllGlhGNhhhlhhhh+pKpL+SpsshL.shtshhchlphhsphh.shhhhhs....... CONSENSUS/50% tllGlhGNlllIhlsh+cKpLRS+sulLlslpClsHllClhGplhsshhhhtsp...... 6239.C13D9.4_from_19_to_274-------------------------------------QLNREECYQIIAFY------VLF CONSENSUS/80% .......................................ppt.Ca.h..........hhh CONSENSUS/65% .....................................thppppCahh.hhh......las CONSENSUS/50% .....................................pls+spCFhhlsha......lFu 6239.C13D9.4_from_19_to_274QSAQSVI----MVVI------VLDILIFVKFPTFYRNIS-------------KSQYIFVT CONSENSUS/80% .shts.h....hh.h......slDhhhhl.hPhhah.h.................Yh.h. CONSENSUS/65% .shpuhl....hlhl......slDhhlhlhhPhhY+php..............hhYhhhh CONSENSUS/50% tsuQusl....hLhI......ulDlLlsVpFPhpYRplp.............sstYlsht 6239.C13D9.4_from_19_to_274TFPVITCSIIITVYGYTA---TNED-------------------WIPACTPGFAFTIEAS CONSENSUS/80% hh..hhhs.hhhhhthh....hs.p......................hC....sh...s. CONSENSUS/65% hh.shhauhhhhhhuahh...hssc....................hhhCssshuh.sps. CONSENSUS/50% hlhPllaoshsslhGalt...ts--...................hlhhCsPPhAhsssup 6239.C13D9.4_from_19_to_274R------------------------------------IYKLFILLMSVFVTVIYAVLIRT CONSENSUS/80% .....................................hh....hhh.hhshhhahhhhhh CONSENSUS/65% .....................................haph..hhlslhshllYhhhhhh CONSENSUS/50% p....................................lashsslllsllllllYsllhhl 6239.C13D9.4_from_19_to_274FYLK--------------GHHENSS-------------SLKTMKRLQFSVGIFIF-TWFF CONSENSUS/80% hh..................pt.................hphh+pl.h.lhhhlh.sWhh CONSENSUS/65% hppp................ppp................t+lh+pLhlslslalh.sWhh CONSENSUS/50% h+p+................sssss.............pcKlhKSLploVllFlh.oWhh 6239.C13D9.4_from_19_to_274SQ-IFGLIILQMTEYTAFEASL-------FAHN--------------------------- CONSENSUS/80% s..hh..h.h.h........hh.........h............................ CONSENSUS/65% ot.hhshlhhths.s.phhthl........has........................... CONSENSUS/50% op.lsstlshslstsspstsll.......psas........................... 6239.C13D9.4_from_19_to_274--------SLLTSLAYSNTFYVTMWRSKEYRKQFYSVW CONSENSUS/80% ........shhh.hshs.shaVhhhhs.-YRpthht.h CONSENSUS/65% ........shhlhhuhupshaVhhhpSsEYRpthhpha CONSENSUS/50% ........ulhlsluaSssFYVhaa+SsEYRcsFppla
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |