6238.CBG17408_from_503_to_595TWL-------------------FDAIVLER------------------NGTKNV---VAT CONSENSUS/80% shh......................h.hs...................puthph...th. CONSENSUS/65% ohh...................hs.lphst..................pGpsph...shp CONSENSUS/50% oal...................asslslss..................sGpssl...shs 6238.CBG17408_from_503_to_595TPDN-VGQ--WALNSAFWWH--------------GRVSLFPGETKYIQTTK---PIFLEV CONSENSUS/80% lPct.hsp..h.h.uhshs.t.............ths.ht.....phhshp...shhlp. CONSENSUS/65% lPDs.lTs..Wplhuhuhsss.............uhG.spt....plpshp...shhlph CONSENSUS/50% lPDo.lTo..WclpAlulosst............GlGhsss....clpVtc...PFalsl 6238.CBG17408_from_503_to_595DMPKNV----------------YVNETISPLLTVTGIDLA---KSRET---FVIC CONSENSUS/80% thPh.l................h.s-th.h.h.lhNh.t....tthph...plth CONSENSUS/65% sLPh.l................hpG-phpltsslhNhhs....pshps...plpl CONSENSUS/50% sLPhol................t+GEplplplsVaNats....pshcl...pVsL
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |