CAA01602|CAA016 CIPGMAIPHNPL--------DSCRWYVSTRTCGVG-----------------PRLATQEM CONSENSUS/80% C.....................hh.h.................................. CONSENSUS/65% Cttsh.t............h.sshshh.............................tt.s CONSENSUS/50% Cssshtp............hssCtshlttt..........................ssss CAA01602|CAA016 KARCCRQLEAIP-----------AYCRC--EAVRILMDGVVTSSGQHEG----------- CONSENSUS/80% .ttCCttltth..............ChC...hht.......................... CONSENSUS/65% .ppCCstlpsls...........t.ChC..tthpt.h....................... CONSENSUS/50% spsCCspLcsls...........ssCpC..tslpsss.t..................... CAA01602|CAA016 -------------------------------------RLLQDLPGCPRQVQR-----AFA CONSENSUS/80% ............................................................ CONSENSUS/65% .............................................ht.t.h......... CONSENSUS/50% ..........................................h.thststst........ CAA01602|CAA016 PKLVTEVECNLATIH-----GGPFC- CONSENSUS/80% ...tlst.Csh.............C CONSENSUS/65% ...plsstCslsh........s.pC CONSENSUS/50% ...sLPspCslsh........sssC
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |