6239.B0286.3_from_269_to_415CHVLVIMGSGSDGVFARKI--------SDEAKK-FGLE--------------TTLKVSS- CONSENSUS/80% s.VullhGSpSDh.hhptu........sthLpt.hsl...............a-htlhS. CONSENSUS/65% shVullMGSpSDhssMccA........sphLcp.hGls..............a-hpVsS. CONSENSUS/50% spVuIIMGScSDassMccA........AclL-c.hGls..............YEscVlS. 6239.B0286.3_from_269_to_415AHKTTSDTLEVIADFE---------------------ESGVPTVVIAVAGR-SNGLGPVI CONSENSUS/80% AHR.Pt.hhphhppht......................tpshpslIusAGh.uupLsGhl CONSENSUS/65% AHRoPcthhpaucpAp......................tcGhcVIIAuAGt.AAHLPGhl CONSENSUS/50% AHRTP-chhcaAcsAc......................p+Gl+VIIAGAGG.AAHLPGMl 6239.B0286.3_from_269_to_415AGNS-SLPVINCPPPSES--TSLD-IWSSLRMPN---GIGCTTVL----DPSEAALAAAK CONSENSUS/80% Au.T..hPVlGVPhtst..htGhDuLhollpMPt...GhssuThsls..suhNAuhhuht CONSENSUS/65% AuhT.slPVIGVPlpupt.LsGhDuLhSlVQMPs...GlPVuTluIs.suAhNAulhAsp CONSENSUS/50% AuhT.sLPVIGVPVposs.LsGlDSLLSIVQMPu...GlPVATlAIG.sGApNAuLLAsp 6239.B0286.3_from_269_to_415ILASHN----HIV-FGKVLTAQLKNQINI CONSENSUS/80% hlu.........h.ttth.thp.t.ttth CONSENSUS/65% lLuhts.....tl.tppltta+tp.pppl CONSENSUS/50% ILulpD....spl.sp+LpsaRpppscsV
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |