Q66HC6_RAT/5-85 VDWLQSQSGVCKVGVYSPGDNQHQDWKM-------------------------------- CONSENSUS/80% lDWLpSppGVCKVDlYSPtspQsQDhKh................................ CONSENSUS/65% lDWLpSppGVCKVDlYSPtspQsQDhKh................................ CONSENSUS/50% VDWLQSQsGVCKVDVYSPGDsQcQDWKM................................ Q66HC6_RAT/5-85 ----------------------------DSSTDPVRVLSWLRKDLEKSTAGFQDSRFKPG CONSENSUS/80% ............................pusoDPlpVLsWLhpDLpK.suGFQcs.hpPu CONSENSUS/65% ............................pusoDPlpVLsWLhpDLpK.suGFQcs.hpPu CONSENSUS/50% ...................o-tSlslFK-ASoDPVRVLSWLR+DLEKSTAGFQDuRFKPG Q66HC6_RAT/5-85 ESSFGEEVAY-PGDQRKGFCVDYYNTTNK--------GNPGRLHFEMSHKET-------- CONSENSUS/80% pSohtccsus.pGD.+Ku.s.-hYsshsc........ssPtpL+hEMotpcs........ CONSENSUS/65% pSohtccsus.pGD.+Ku.s.-hYsshsc........ssPtpL+hEMotpcs........ CONSENSUS/50% ESShG+EVus.sGD.HKGFSVDYYNTTu+........GsPpRLHFEMoH+EN........ Q66HC6_RAT/5-85 -------PPQGLIAHVGNGGSIDEVSFYANRLTNLVIAMARKEINEKIHGTENKCVHQSL CONSENSUS/80% .......ssQtshsp.sstsSlD-lSFYsNRLosLVItMARKEIpEKl-G.cNKClHpSl CONSENSUS/65% .......ssQtshsp.sstsSlD-lSFYsNRLosLVItMARKEIpEKl-G.cNKClHpSl CONSENSUS/50% .......PsQGslApssNEuSlDEVSFYANRLTNLVIAMARKEINEKI-GoENKCVHQSl Q66HC6_RAT/5-85 YMG----DDPTPHKSLSTVASELVNETVSACSKNITGDKAPGSGDRALASSQS-PGLRFT CONSENSUS/80% Yhu....scsoPppulSKlASEhspEsV................................ CONSENSUS/65% Yhu....scsoPppulSKlASEhspEsV................................ CONSENSUS/50% YMG....--PoP+KSLSKIASELVNETVoACS+NhssDKAPGSGDRs.uo.QS.PsL+ap Q66HC6_RAT/5-85 STLKIKESTKEGKCPDNKPGSKKSFFYKEVFESRNAGDAKEGGRSLPGDRKLFRCPDRPD CONSENSUS/80% ...clppSphcGpG.-s+suu+KSFhYpEl.ppppuG-tpp............hs.ccsc CONSENSUS/65% ...clppSphcGpG.-s+suu+KSFhYpEl.ppppuG-tpp............hs.ccsc CONSENSUS/50% STLKIKESsKcGpGPDsRPGSKKSFFYKEVFESRNuGDA+EGGR.hPt-RKhFRu.-RPD Q66HC6_RAT/5-85 DFSNSISQGIMTYANSVVSDMMVSIMKTLKIQVKDTTI-ATILLKKVLMKHAKEVVSDLI CONSENSUS/80% -FssSISpGlMsYANpVsSDMMVSlMKTLKlpspspsI.AollLK+VLlKHsKElVSDLI CONSENSUS/65% -FssSISpGlMsYANpVsSDMMVSlMKTLKlpspspsI.AollLK+VLlKHsKElVSDLI CONSENSUS/50% DFosSIScGIMTYANSVVSDMMVSIMKTLKIQVKDTTI.ATIVLKKVLLKHAKEVVSDLI Q66HC6_RAT/5-85 DSFMKNLHSVTGSLMTDTDFVSAVKRSFFSHGSQKA-TDIMDAMLGKLYNVMCAKKYPEN CONSENSUS/80% DShMKNLHslTGsLMTDoDFVSAVKRshFsHGpQpA.sDIM-AMLt+Lhsshhuc..... CONSENSUS/65% DShMKNLHslTGsLMTDoDFVSAVKRshFsHGpQpA.sDIM-AMLt+Lhsshhuc..... CONSENSUS/50% DSFMKNLHNVTGoLMTDTDFVSAVKRolFSHGSQKA.TDIMDAML+KLYSVlhAKK.PEp Q66HC6_RAT/5-85 IRKARDKSESYSLISMKSRPGDPKLSN--LNFA-MKSESKLKE--NLFSACISEKEKTCA CONSENSUS/80% ..KtcsKSpShShhShK.G.tDPKp+N..lpFu.MKuEhKh+-..phhusPpsc.phTsA CONSENSUS/65% ..KtcsKSpShShhShK.G.tDPKp+N..lpFu.MKuEhKh+-..phhusPpsc.phTsA CONSENSUS/50% lRKscDKSESYSLlSMKuGsGDPKsRN..LNFAsMKSEsKlRE..KhhS-Pssc.EcTCA Q66HC6_RAT/5-85 ETLGEHIIKEGLNMWHKSQQNS--------PGLERATKQGAVPQEVSFECP-DPCEVNPL CONSENSUS/80% EplGEHIlKEGLThWpppQQt...............................s.spls.. CONSENSUS/65% EplGEHIlKEGLThWpppQQt...............................s.spls.. CONSENSUS/50% ETLGEHIIKEGLTlWHpSQQpp........ssh.tsppQhtss.-hshthP.DsCcVush Q66HC6_RAT/5-85 QQPQPPENFEN-FMCESDSWAKDLIVSALLLIQYHLAQGGRMDAQSFLEAAASTNFP--- CONSENSUS/80% hssp.sEp.EN.hMhsoDSWAKDLIVSALhLIQYHLsQtu+hcsps..EssGoo.h.... CONSENSUS/65% hssp.sEp.EN.hMhsoDSWAKDLIVSALhLIQYHLsQtu+hcsps..EssGoo.h.... CONSENSUS/50% lsPQsPEKhEN.FMs-SDSWAKDLIVSALLLIQYHLAQGG+tDApSFlEAAGSTNhY... Q66HC6_RAT/5-85 -----------TKSSPVVHDEGKVKSPPLKICEQE----QTEKKDLMSVIFNFIRNLLSE CONSENSUS/80% ...........sscu.sspc.psh+uPs..ssppE....pspKhDh.slhhshIppLLSE CONSENSUS/65% ...........sscu.sspc.psh+uPs..ssppE....pspKhDh.slhhshIppLLSE CONSENSUS/50% ...........osKSPuV+cEuSl+SPslpsC-pE....-oEKKDLpSVlFNFIRNLLSE Q66HC6_RAT/5-85 TIFKGSRNCESKAHEQIIKEEEINLCERPLSPCERPMSPPVPKFCEDEEATGGALSGLTK CONSENSUS/80% o.FKs-cssEs...............-p....CpcPhuspssphsccsE.s.sthpshTc CONSENSUS/65% o.FKs-cssEs...............-p....CpcPhuspssphsccsE.s.sthpshTc CONSENSUS/50% TIFKsDcsCEuKs.cp...-......EsKh..CERPhosssA+lsEc-E.TsGAhuGLTK Q66HC6_RAT/5-85 MVANQLDGCMNGQMVEHLMDSVMKLCLIIAKSCD--SPLSELGDEKCGDASRPSSAFPDN CONSENSUS/80% Msssph.tpMNGQhl-+Lh-SVMKLCLIhAK.ss..usLAEL.--puusAS+.s.thPcs CONSENSUS/65% Msssph.tpMNGQhl-+Lh-SVMKLCLIhAK.ss..usLAEL.--puusAS+.s.thPcs CONSENSUS/50% MsssplDGpMNGQMVDHLM-SVMKLCLIIAKSCD..AuLAELGDEKuGDASRPoSAFP-s Q66HC6_RAT/5-85 LYECLPVKGTGTAEALLQNAYLAIHNELRGLSGQPPEGCEIPKVIVSNHNLADTVQNKQL CONSENSUS/80% la...........EuhhppuY.s...............s.uPcVIVsNps.TsolQ.KQL CONSENSUS/65% la...........EuhhppuY.s...............s.uPcVIVsNps.TsolQ.KQL CONSENSUS/50% LYECLssKGTGoAEAlLQNAYQAIHNEhRuhSuQPPEGCsuPcVIVSNHNLTDTVQNKQL Q66HC6_RAT/5-85 QAVLQWVAASELN-VPILYFAGDDEGIQEKLLQLSATAVEKGRSVGEVLQSVLRYEKERQ CONSENSUS/80% QAVLQWlAASphN.VPhLYFhGDD-G..EKLhQlSAtAsEKGhSVG-lLQpVh+atKERQ CONSENSUS/65% QAVLQWlAASphN.VPhLYFhGDD-G..EKLhQlSAtAsEKGhSVG-lLQpVh+atKERQ CONSENSUS/50% QAVLQWVAASELN.VPILYFAGDDEGIQEKLLQLSAsAVEKGpSVGEVLQSVLRYEKERQ Q66HC6_RAT/5-85 LDEAVGNVTRLQLLDWLMANL CONSENSUS/80% LDEAVGNhsthQLLDWLhsNL CONSENSUS/65% LDEAVGNhsthQLLDWLhsNL CONSENSUS/50% LDEAVGNVTRLQLLDWLMsNL
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |