AFAM_RAT_1 --LPTKPQDVDHFNATQKFINENVAYLTIIASAQYVQEASFEEVEMLVKVMLDYKDRCLA CONSENSUS/80% .........pp.st.hpphGc.thpshhlhthsphh.psshtpl.plspchsphhppCst CONSENSUS/65% .....t.htpphCphhpphG-csapshhllthop+hPpsshpclsclspclschtpcCCt CONSENSUS/50% .lppspshpcphCspapclGEcsFcuhsLlpaoQKhPpuoac-lscLsc-lsclsccCCp AFAM_RAT_1 DST---LPECSKIANDAIQDMLCDMKGLPQKHN-FSHCCRQAG-FQRRLCFFYNKKAN-- CONSENSUS/80% ..p.....tC.pp.hs.hht.hC..tp.h.....htpCCpp....p+t.Ch.tht.s... CONSENSUS/65% .sp...h.sChcs.hshhhsclCpppphhssp..lscCCspsh.hpRp.ChhthpsD... CONSENSUS/50% .s-...thsCs--htstltcclCspp-hhsspstlscCCscsh.sERspCFtshcsDp.. AFAM_RAT_1 ----VGFLPP-----FPTLDPEEKCQAYKNNSESFLNLYMYEVARRNPFAFAPVLLNVAA CONSENSUS/80% ....Pt.hs........h...tphCp..tpt.thhhtphlhchs+ppP.h....lhthht CONSENSUS/65% h...Ptthss.....tphstspclCpthpcspphhhtpaLaEhu+++Pphs.s.Lhtlsp CONSENSUS/50% s...Psslss.....psaspsc-lCpsaccs+psFhscaLaEluRRHPchssspLLplAc AFAM_RAT_1 RFEEAATTCCEQQQK--ATYFQDK CONSENSUS/80% tatthlppCCttts....tChttt CONSENSUS/65% papthlpcCCpsp-t..tsCaspc CONSENSUS/50% cYpuhLc+CCsu-Dp..ssCFssc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |