Consensus terms for the AMA-1 domain

O15681_TOXGO/3-522-------LVGVQVLLVLVADCTIFASGLSSSTRSRESQTLSASTSGNPFQANVEMKTFME
CONSENSUS/80%    ........................................................thht
CONSENSUS/65%    ......................................................hppaht
CONSENSUS/50%    ...........................................pstps.ph.s.WcsFMp


O15681_TOXGO/3-522RFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRLPYRNNFLEDVP
CONSENSUS/80%    phsl.p...........t.tp.t.h........CPlhGKtI...................
CONSENSUS/65%    +aslt+hHtSGlhVDLGpptpVtsh.YR.P.GhCPVhGKtI.lpps.h..hps.hhts..
CONSENSUS/50%    KaDIs+sHGSGlhVDLGE-ApV-stcYRhPsGKCPVlGKuIhlpNupssFLpslsptD..


O15681_TOXGO/3-522TEKEYKQSGNPLPGGFNLNFVTPSGQRISPFPMELLEKNS-NIKASTDLGRCAEFAFKTV
CONSENSUS/80%    ................................hc.h.hpp......sphs.Ctpas..h.
CONSENSUS/65%    ...........hssu.t.s..p..hp.hohtsh+.h.hpp......s-hu.Cucast.hl
CONSENSUS/50%    ..........ltsGGhshs.ssshlSPIohpsL+sh.Kc+..hht.sDlohCAcauushV


O15681_TOXGO/3-522AMDKNNKATKYRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVK--GEPPDLTWYCFKPRK
CONSENSUS/80%    ...ststsotY+aPhVaDpppphCahLY.shQ...G.+......................
CONSENSUS/65%    s..ssstsopYRaPhVYDpspphCahLY.shQ.N.Gs+YCs.c...t..p.t.hChhP.K
CONSENSUS/50%    P..usN+NSsYRYPhVYDcs-KhCYILYluhQhNpGsRYCspD...-pspsohhChpPcK


O15681_TOXGO/3-522SVTENHHLIYGSAYVGENPDAFISKCPNQALRGYRFGVWKKGRCLDYTELTDTVIERVES
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ..tp.tph.Yhot.l..s...a...C..................................
CONSENSUS/50%    s.cp.pcLhYhopslc.D...W.psCP.hsl+suhFG.a...hstsss..shh...ts-.


O15681_TOXGO/3-522KAQCWVKTFENDGVASDQPHTYPLTSQASWNDWWP---------------LHQSDQPHSG
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ............................................................
CONSENSUS/50%    .tpsthlh..ssussp.p..p..hps.t.hpphh..................pst..hot


O15681_TOXGO/3-522GVGRNYGFYYVDTTGEGKCALSDQVPDCLVSDSAAVS-------------------YTAA
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ............................................................
CONSENSUS/50%    GhGhNau.a.s....ptKC.l.p.hPsCLl.spshhu...................hpst


O15681_TOXGO/3-522GSLSEETPNFIIPSN----------PSVTPPTPETALQCTADKFPDSFGACDVQACKR-Q
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ............................................................
CONSENSUS/50%    ...tp........p............p....s..pphtpspc.ppho.uossFhshsslc


O15681_TOXGO/3-522KTSCVGGQIQSTSVDCTADEQ---NECGSNTALI-------AGLAVGGVLLLALLGGGCY
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ............................................................
CONSENSUS/50%    Kcth.spp.pl.hhpc.ts.Y....ps.pp.hLh.......hhlhlusslllh.lhhhhh


O15681_TOXGO/3-522FAKRLDRNKGVQAAHHEHEFQSDRGARKKRPSDLMQEAEPSFWDE---------------
CONSENSUS/80%    ............................................................
CONSENSUS/65%    ............................................................
CONSENSUS/50%    at.h.ptp.......h.c..pssphh..................................


O15681_TOXGO/3-522--
CONSENSUS/80%    ..
CONSENSUS/65%    ..
CONSENSUS/50%    ..

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T