Consensus terms for the Agro_virD5 domain

Q9JN11_9RHIZ/57-0VKLGPAERAAYENWCEPGRPTWKDLIIKARVDPIDDVIWLRDLEEDTPSTFRYEGMPLGL
CONSENSUS/80%    h+LGAAERpAaEsWstusRPTWKDLllpARlssIDusAW..DhsEsosSsFhYEGlPLGE
CONSENSUS/65%    h+LGAAERpAaEsWstusRPTWKDLllpARlssIDusAW..DhsEsosSsFhYEGlPLGE
CONSENSUS/50%    MKLGAAERuAYEsWstusRPTWKDLIL+ARLDAIDSSAWLsDlGE-TPSTFRYEGlPLGE


Q9JN11_9RHIZ/57-0GERKAYENWQEDAQPTWEDLVVSARMTELGRPHGITGEYTSLAGSKNTSSISLKRKRSNL
CONSENSUS/80%    uERpAYcpWtEsAQPoW--LVVsARhtELspsusIssEhsshptscphRS-u.KRKRps.
CONSENSUS/65%    uERpAYcpWtEsAQPoW--LVVsARhtELspsusIssEhsshptscphRS-u.KRKRps.
CONSENSUS/50%    GER+AYEcWQE-AQPTWEDLVVNARlsELsssAuIssEassLpssE-FRS-AsKRKRoss


Q9JN11_9RHIZ/57-0ID-DENSSGSFSYDGMKLGEAERSAYGDWAEAEPPTWKDLVLRARVSSINDSAWLFD-SQ
CONSENSUS/80%    Ispccs.stsFpaDGMRLGpPERtAacNWucscPPTWKDLllcARLcAIssSsWL.p..p
CONSENSUS/65%    Ispccs.stsFpaDGMRLGpPERtAacNWucscPPTWKDLllcARLcAIssSsWL.p..p
CONSENSUS/50%    IDQDENsPsSFcYDGMRLGEPERuAY-NWucPEPPTWKDLIL+ARLcAIDoSAWLs-.sp


Q9JN11_9RHIZ/57-0TSSSSFEYNGVPLGEPERQALRQWQGDAQPTWEDLVVNARMAELCH--AGWIEG-QKGCF
CONSENSUS/80%    ssoSsFEYEGlPLGEGER.AYccW.tsAQPsWEDLVVsARhAELtc..ssWhpc.p+sth
CONSENSUS/65%    ssoSsFEYEGlPLGEGER.AYccW.tsAQPsWEDLVVsARhAELtc..ssWhpc.p+sth
CONSENSUS/50%    sSSSoFEYEGlPLGEGERQAYEKWQEDAQPTWEDLVVNARlAELsH..PoWIs-.EHssh


Q9JN11_9RHIZ/57-0EKRGEA-LHASERGSQRPIVQRTDSSDSFLYDGRRLGAPERTAYERWSKRERPTWEDLIL
CONSENSUS/80%    Ecs.-s..ctpt+s.thPlstcpsSusSFlYDGhtLGAsE+AAa-RWSKP-RPoWEDLIL
CONSENSUS/65%    Ecs.-s..ctpt+s.thPlstcpsSusSFlYDGhtLGAsE+AAa-RWSKP-RPoWEDLIL
CONSENSUS/50%    EEusEspscASpRshpcPIsQEpsSSASFlYDGh+LGAPERAAY-RWSKP-RPTWEDLIL


Q9JN11_9RHIZ/57-0DAHQARIESDAVTTQAIGQSSSLVFLYEGKSLGCREREAYEKWRQPAQPRWQNLVVNARL
CONSENSUS/80%    DA+QAuIEusuVos.hIGcsoSsVFLYEGhSLGsAERpAYGRWRQ.AQPRWQNLVVNARL
CONSENSUS/65%    DA+QAuIEusuVos.hIGcsoSsVFLYEGhSLGsAERpAYGRWRQ.AQPRWQNLVVNARL
CONSENSUS/50%    DARQAAIESDuVSsstIGKoSSSVFLYEGMSLGDAERQAYGRWRQPAQPRWQNLVVNARL


Q9JN11_9RHIZ/57-0AELDPSVWIADERDPLDDGDALGRPSYTSLTDRSDVPLDDQSIYHRSDLVREQVSESSQK
CONSENSUS/80%    AELDPusWIsDEHDPh--u-Ahu.suQuStss+Sp.sLssQs.utRPshApt.sppsoHh
CONSENSUS/65%    AELDPusWIsDEHDPh--u-Ahu.suQuStss+Sp.sLssQs.utRPshApt.sppsoHh
CONSENSUS/50%    AELDPSAWIPDEHDPFE-GEAsuhsSQASsANKSssuLGsQS-S+RPuhA+EssQEsTHl


Q9JN11_9RHIZ/57-0QFAACSESETIPVSWFTASGLDANNTENIAASDPVDGTGGVKRLGSKSDRTVTASIHDVN
CONSENSUS/80%    QssssuQ.ETRRsLhFsusGhDAspTpSIAsssphDGsuKVKRLGsKucRsspAohassp
CONSENSUS/65%    QssssuQ.ETRRsLhFsusGhDAspTpSIAsssphDGsuKVKRLGsKucRsspAohassp
CONSENSUS/50%    QsPoCSQLETRRALaFGSSGRDAspTESIAcsNRlDGVGKVKRLGoKSRRuVsATsHuVs


Q9JN11_9RHIZ/57-0SSTKRLLLNEFGLEAPRPSPEKTVRLRSDNIGTYGSRRNERMRLATETGAYESEHIFGFK
CONSENSUS/80%    SSsptL.sc-tshtA..ossEpsspsRsDNIGTYGSRKNERsRLATETGKYESEHIFGFK
CONSENSUS/65%    SSsptL.sc-tshtA..ossEpsspsRsDNIGTYGSRKNERsRLATETGKYESEHIFGFK
CONSENSUS/50%    SSscRLLS-EsGppAssSsPEKsVRSRoDNIGTYGSRKNERARLATETGKYESEHIFGFK


Q9JN11_9RHIZ/57-0AVHDTARATKEGRRLERPMPAYLEYKGLHRQHVGTGRGRTKLVGRGWPDDTSYRSDQRAT
CONSENSUS/80%    VVHDTLRuTKEGRRLERPMPAYLEhKpLHRQHVGTGRGRT+LVGRGWPDDASYRSDQRAT
CONSENSUS/65%    VVHDTLRuTKEGRRLERPMPAYLEhKpLHRQHVGTGRGRT+LVGRGWPDDASYRSDQRAT
CONSENSUS/50%    VVHDTLRATKEGRRLERPMPAYLECKELHRQHVGTGRGRTRLVGRGWPDDASYRSDQRAT


Q9JN11_9RHIZ/57-0LSDPVARSEGATASNGYQLNQLGYAHQLASDGLQSESPDGVALPIQVATTSYNYTVSRDP
CONSENSUS/80%    LSDPVASsEGsTASNGYQLNQLGYAHQLAscGLQSEoPDGVhhPlQVATTSYNYTVSRDP
CONSENSUS/65%    LSDPVASsEGsTASNGYQLNQLGYAHQLAscGLQSEoPDGVhhPlQVATTSYNYTVSRDP
CONSENSUS/50%    LSDPVASuEGATASNGYQLNQLGYAHQLANDGLQSETPDGVsMPIQVATTSYNYTVSRDP


Q9JN11_9RHIZ/57-0VLVPPDKNEAPQLLHLGPRGQTEAVLARETALTGKWPTLEREQQVYREFLALYDVKKDLE
CONSENSUS/80%    VLsPPoKEQAspLLHLGPRGQTEAVLARETALTGKWPThEREpQVYpcFLALY-lKKDL-
CONSENSUS/65%    VLsPPoKEQAspLLHLGPRGQTEAVLARETALTGKWPThEREpQVYpcFLALY-lKKDL-
CONSENSUS/50%    VLSPPSKEQAPQLLHLGPRGQTEAVLARETALTGKWPTLEREQQVYREFLALYDVKKDLE


Q9JN11_9RHIZ/57-0AKSVGVRQKKKEVSSALDRTARLIITSPSKARSE-AETEKAIDELDDRRVYDPRDRAQDK
CONSENSUS/80%    AKplGlRpKKtuLsuALsRTAuLIhsSP.cApSpsAcsEpss-c.D-RRVYDPRDRuRDc
CONSENSUS/65%    AKplGlRpKKtuLsuALsRTAuLIhsSP.cApSpsAcsEpss-c.D-RRVYDPRDRuRDc
CONSENSUS/50%    AKsLGVRQKKpALVSALNRTAuLIGASPhKAQSssAEVEpusDEhDERRVYDPRDRuRDK


Q9JN11_9RHIZ/57-0AFKR
CONSENSUS/80%    AFpR
CONSENSUS/65%    AFpR
CONSENSUS/50%    AFsR

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T