Consensus terms for the Alpha_TIF domain

O56869_9ALPH/44-0DWLRNPGPPALVNAPKY--V--------RPSKCSASFLAKNALTELQFADWDKIQHVLKT
CONSENSUS/80%    sh.ss........s..h...........sP.sssPshLhppLlp-LsFs-GPtLhshh-p
CONSENSUS/65%    ulhsss.ss..s.usth..s...ph..ssPpsssPshLappLlp-LsFsEGPsLlshhEp
CONSENSUS/50%    uLLusssss..stussh..s.phpluhsPPcsASPuuLYpRLlsELsFuEGPuLLosLE+


O56869_9ALPH/44-0INIDIFSCVPVGENGLCNMDWFSLDTEKIWTLMDSGTPNV----SPNLLITPG--PPPEC
CONSENSUS/80%    hN.DlFSshPhs.clYtch.hLSssss-Vlt....thspt....t.lslts+G..shPp.
CONSENSUS/65%    hNEDLFSChPhNt-LYpchthLSssss-Vlp....ssssp....s.lsLps+Gs.shPps
CONSENSUS/50%    WNEDLFSClPsNsDLYs-sslLSTsP--Vlc....ulPss...ssslDLssHGspshPsl


O56869_9ALPH/44-0IKTPEEAPAYFEAISNYFESVLAAREAEYAKLLAEYAKSLAKYIRHKSQKVGRGLRALEL
CONSENSUS/80%    Pt..-tLs.YstslppaFhsELcAREptYtpLhhtYCpulhpaLptpspp..cs....s.
CONSENSUS/65%    Ptpc-tLPsYVpulppaFhsEL+AREcpYspLLhsYC+ALhpYLptsspp..+G.t..st
CONSENSUS/50%    PAoc--LPuYVpuVQcFFhuELRAREEsYu+LLssYC+ALl+YLRuou++spRGspspss


O56869_9ALPH/44-0DTEEAKKRFTVLMKSEYYKGIEKLLIIFLVHLVLNACRDVARIIWVQQRDSSSVLQKVTY
CONSENSUS/80%    .t.....ph+t.lttcYYR-suplARlLalHLYlsssR-luhtlaApQ..t.slFssLph
CONSENSUS/65%    .t.p...ph+p.lttRYYREsApLARLLaLHLYlsssR-lSW+LaApQshtpslFsuLph
CONSENSUS/50%    sp.c..p+hRQslpsRYYREsA+LARLLYLHLYLolTREVSWRLaApQstpQDVFsuL+a


O56869_9ALPH/44-0RW-ESQQLHCIFQPLLVSPGPVFLDNDPLPLQTLQHVNYVRYLLGVPVLRFSMIEE--SP
CONSENSUS/80%    tW.ptRQhpClFpPllhsHGhVhlcstsls.tpLpplNYhRppLGLPLlRsuhlEE.tsP
CONSENSUS/65%    pWtptRQhpClFpPlLaNHGlVhl-stsLsstcLpclNYhRccLGLPLlRsuLlEE.suP
CONSENSUS/50%    cWsQpRQFsCLFHPlLFNHGlVhLEGcPLsupcLRclNYRR+ELGLPLlRsuLlEEcsuP


O56869_9ALPH/44-0SAQYIPYDKTAPSAYDVLATIARTCLTSSGCSRA-------SHDHTYARDNEKP-NYSSS
CONSENSUS/80%    Lst.P.apsphPRu.GaLhp.l+sKh-sYup.ts......sht-HsYu+.ht...sYGoo
CONSENSUS/65%    Lst.PsFsuphPRu.GaLhppIRsKh-uYSptps..s...sht-HsYu+.hps..NYGoo
CONSENSUS/50%    LsptPsFSushPRosGaLsapIRuKL-AYSssHsspPt.psppEHoYARsscss.NYGST


O56869_9ALPH/44-0RIVLLADSALD
CONSENSUS/80%    hEuh.hsssss
CONSENSUS/65%    hEuh.hcsPsP
CONSENSUS/50%    lEAM.lDPPSP

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T