YQII_BACSU/90- VAKASANQAD--LFVSIHVNSGVA-SAS----GTETYFQSDY------------------ CONSENSUS/80% sthupt.tus..hhlSlHhsu.ss........Ghpsahhst................... CONSENSUS/65% sphApptpA-..hFlSIHssussstt.....tGspsahhss................... CONSENSUS/50% sphAsptpAD..lFlSIHuNuususss....pGscsahhsst.................. YQII_BACSU/90- -----------------------------EGENSRRLASDIQSQ-LVSSL-QTRDRGVKE CONSENSUS/80% .................................s.thsp.l.tp.hhp.h.thhppt.p. CONSENSUS/65% ...............................t.stpluptlhpp.lhpth.thpsRuscp CONSENSUS/50% ...............................tpupsLAcslpsp.ltcss.slpcRGl+p YQII_BACSU/90- -SD-----FYVITYSQMPSVLAELGF----ITNSSDADKLGSEEYQQKAADAIVNGID CONSENSUS/80% .ss.....hhllctsphPuhLhEhua....lssst-tthl.stth.pthutulhtulh CONSENSUS/65% .us.....hhVl+psshPulLlEhGF....lossp-tphLtstpappplApulspGlt CONSENSUS/50% .As.....asVLRsosMPulLlEsGF....loNss-scpLpsssapp+lAcuIssGlt
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |