235909.GK1570_from_231_to_321PVNFLHAIDGTP----LA------------GTNELNPRYCLKVLALFRYMNPTK-EIRIA CONSENSUS/80% slshl.sh.ss.....ht................lss.phlphlshhRlhhPtt..lhlu CONSENSUS/65% slshLhPhtGs.....htt.............t.lssh-hl+hlAhhRlhhPps.tlplo CONSENSUS/50% PlNtLpPlpGTP....Lspt............pslssp-hl+sIAlhRlhhPcu.tlRLS 235909.GK1570_from_231_to_321GGR-EVNLR--SLQP----LGLYAANSIFVGD------YL-------------------T CONSENSUS/80% stc p...p...hth.....h.uGssshhhG............................p CONSENSUS/65% uuc pthhc..thphh...ph.AGusohhhGt......hh...................o CONSENSUS/50% uGR cshhc..phQsh...shhAGANolhsGs.....phL...................T 235909.GK1570_from_231_to_321TAGQEKSADYQ-MLEDLG-FEI CONSENSUS/80% hts.t..t-h..hhtphG.h.. CONSENSUS/65% ssstpstp-ht.hlpphG.hps CONSENSUS/50% TssscsscDhp.hlpchG.hps
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |