Consensus terms for the BBC domain

gi|5732193|dbj|  HKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQ-------------------ERKAEAL
CONSENSUS/80%    .+.tltphlppl.tct.phppthtpl.phhp.lp...................pphtthp
CONSENSUS/65%    p+ttlpphlsplpc+ptphppshpplpshhpplp...................pptppsc
CONSENSUS/50%    p+psLpssLsclsc+psplpcsssplpstlpplp...................cspcssc


gi|5732193|dbj|  AQISAAFEDLEQALQQRKQALVSDLESICGAKQKVLQTQLDTLRQGQEHIGSSCSFAEQA
CONSENSUS/80%    tplp.th.plhp.lppttp.hltplpp.tttp.h.L.p.hpphp.h.pphpthhphhpph
CONSENSUS/65%    pplcsthcpLhptlpppcptllpclcphppp+hppLppQhpphpthpcplppshpasppt
CONSENSUS/50%    scIcstaccLpssLsc+ccpLlscL-stpcsKpcsLpsQhpslpsppcclssslpFspcA


gi|5732193|dbj|  LRLGSAPEVLLVRKHMRERLAALAAQ
CONSENSUS/80%    lp.sss.thl..pp.hh.thpth.t.
CONSENSUS/65%    lppssshtllhpcchlhhphpphtct
CONSENSUS/50%    LspusssslLhs+ctlspplppltcp

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T