179529/1-226 RISQKGLDYASQQGTAA---LQKELKRIKIPDYSDSFKIKH--------------LGKGH CONSENSUS/80% .h..tuhthhtp.sh.h...lpptl.phphsp.pt......................... CONSENSUS/65% RlpppuLphssp.uhts...LpptL.clphPshptth...................h.sp CONSENSUS/50% Rlsp+GLsYuuppusss...LppcLt+lslP-lssshthhh..............hGtup 179529/1-226 YSFYSMDIREFQLPS---SQISMVPNV-GLKFSISNANIKISGKWKAQKRF-------LK CONSENSUS/80% hth.pl.h.phph.p.....hp..ss...l.h.hpphshththphphth.........h. CONSENSUS/65% hshhplplpphpl.p...sthph.Ps...lthslpphslthpsphpsphsh.......h. CONSENSUS/50% ashpsLplpphplss...splcshPup.slsloISssSl+lpGchcuplsh.......lp 179529/1-226 MSGNFDLSIEGMSISADLKLGSNPT--SGKPTITCSSCSSHINSVHVHIS--KSKVGWLI CONSENSUS/80% h.s.hph.hp....phth.htpt.....s.stlp..pCpsthtthplth.......shhh CONSENSUS/65% htGphphtscshshphtlpltpst....GtsplsspsCpsslpplclph...t..hshhh CONSENSUS/50% lpGpaclulcsloIsssLplspss...SGpspVsssSCsosIsclclshp..ushsGhll 179529/1-226 QLFHKKIESALRNKMNSQV----CEKVTNSVSSKLQPY-------------------FQT CONSENSUS/80% p.hpp.lttthp.hh.p.l....C.hlpphls.hhp.h...................ht. CONSENSUS/65% phhpp.lpstlpphlpptl....Cphlpphlsshhp.h...................lpt CONSENSUS/50% shFcspIsssl+psLsspl....Cchlspslosclssh...................Lps 179529/1-226 LPVMTKI--------DSVAGINYGLVAPPATT------------AETLDVQMKGEFYSEN CONSENSUS/80% hs.t.tl........t..hs.sh..ht...ht............tp.hp..hpsphh..s CONSENSUS/65% hshphpl........p..hshshshht.stss............tphlc.phpschh.hs CONSENSUS/50% lPlsspl........-shsulDYoLlssssso............ussL-sph+uchahts 179529/1-226 H CONSENSUS/80% c CONSENSUS/65% c CONSENSUS/50% +
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |