Q92547/1-78 CPIFLG-----CIICVTG----------LCGLDRKEVQQLTVKHGGQYMGQLKMN----- CONSENSUS/80% ...hts.....h.hhh..............t..ht.h.thh..hsuph..t......... CONSENSUS/65% .phhps.....hphhls...........hpp.pppphpphlpthGuphhtp......... CONSENSUS/50% sshhps.....hshhls.........t.hssps+splpchlcphGGclssshst...... Q92547/1-78 ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ Q92547/1-78 ----------------------------ECTHLIVQEPKGQKYE---------------- CONSENSUS/80% ............................thshhlh.p....................... CONSENSUS/65% ............................psshllstpstst.h................. CONSENSUS/50% ............................ssTHllssssssppht................ Q92547/1-78 ---CAKRWNVHCVT---TQWFFDSIEKG CONSENSUS/80% ....h...th.hlp....pahht.httt CONSENSUS/65% ...ht.thsh.llp....palhpslppt CONSENSUS/50% .h.tutptsltlls...psWlhcslcpp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |