Consensus terms for the BROMO domain

O60433/1-111     PKRQTNQLQYLLRVVLKTLWKH-------------------------------QFAWPFQ
CONSENSUS/80%    .....t.h..hh..hhp.htpt....................................F.
CONSENSUS/65%    t.tt.p.hpthhptlhpphppp................................hs.sFh
CONSENSUS/50%    pppppcphppllcsllcphcsp...............................thuhsFt


O60433/1-111     QPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYY---WNAQECIQDFNTMFTNCYIYNK
CONSENSUS/80%    p.ss.t...h.tYhphlppPhshptlppplptttY....shtph.tDh.hhhpNshhaN.
CONSENSUS/65%    p.sstpt..hPcYaplIppPhDlpsIpc+lcptpY...pshppahpDhtLhhpNshtaNt
CONSENSUS/50%    cPVspcp..hPDYYclI+cPMDLpTI+++lcsscY...sohc-FhcDlpLlasNAppYNs


O60433/1-111     -----------------PGDDIVLMAEALEKLFLQKINELPT
CONSENSUS/80%    ..................ss.hh..u..ltphh.t.htph..
CONSENSUS/65%    ..................so.hhphuhplpchhtpthpph.t
CONSENSUS/50%    .................ssoplacsAppLcchhppplcchhs

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T