O60433/1-111 PKRQTNQLQYLLRVVLKTLWKH-------------------------------QFAWPFQ CONSENSUS/80% .....t.h..hh..hhp.htpt....................................F. CONSENSUS/65% t.tt.p.hpthhptlhpphppp................................hs.sFh CONSENSUS/50% pppppcphppllcsllcphcsp...............................thuhsFt O60433/1-111 QPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYY---WNAQECIQDFNTMFTNCYIYNK CONSENSUS/80% p.ss.t...h.tYhphlppPhshptlppplptttY....shtph.tDh.hhhpNshhaN. CONSENSUS/65% p.sstpt..hPcYaplIppPhDlpsIpc+lcptpY...pshppahpDhtLhhpNshtaNt CONSENSUS/50% cPVspcp..hPDYYclI+cPMDLpTI+++lcsscY...sohc-FhcDlpLlasNAppYNs O60433/1-111 -----------------PGDDIVLMAEALEKLFLQKINELPT CONSENSUS/80% ..................ss.hh..u..ltphh.t.htph.. CONSENSUS/65% ..................so.hhphuhplpchhtpthpph.t CONSENSUS/50% .................ssoplacsAppLcchhppplcchhs
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |