Q38679/1-109 RNVLVNNEGLYAGQSLV--------EEQYTFIMQ--------DDCNLVLYEYS------- CONSENSUS/80% t..l.ssptl.s.tth.........hs.ap...p..........h.hlhapt........ CONSENSUS/65% sphltsspsLsossslh........hGhaphh.p........t.h.hlhYcp........ CONSENSUS/50% sssLsuscoLsSssulap.......hGFFshssp........pppsulhYcss....... Q38679/1-109 -TPIWAS----NTGITGKNG---CRAVMQPDGNFVVYNVK-------GRAVWASNSR--- CONSENSUS/80% .t.lW.u....sptt.hp.....shhphp.sGplllhs.........st.lWtos.t... CONSENSUS/65% .phlWsu....Npsssspt....stlplppsGsLVlhs.........spslWuosss... CONSENSUS/50% .ssVWsu....NRssslss....upLslssDGNLVlhD.......tpsssVWuSsss... Q38679/1-109 -RGNGNYILVLQKD---RNVVIYGSD--------IWSTGTYR CONSENSUS/80% ...tsshhh.L.ts...Gshllhs..........lWpohs.. CONSENSUS/65% .tspushsh.Lhcs...GNhVlhsss........lWpohshs CONSENSUS/50% .sssushlhpLpcs...GNlVlhcss.....tthlWpSF-aP
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |