Consensus terms for the Bac_rhodopsin domain 

348780.NP1758A_from_4_to_231TSTIYLGMVVALSLGAVVFAAVASRLSGT-ARRLGLIAAVPAAAMAVAYLGM--GLEWLT
CONSENSUS/80%    ...h..h.hshhhhshhhhhhh..th.....chhhhh.hhhshhuhhsYhshs.shshh.
CONSENSUS/65%    hhhhhhhshshhhluhlhhhhhshphsst.t+hhahhshhlshlushuYhshAtshuhs.
CONSENSUS/50%    lssshalssushhlusllFshhutshsss.pRhhahlsslIsslAuluYhuMAoGlGhss


348780.NP1758A_from_4_to_231IETEG------------------REQSIMRFLGYTVALTAYTYLLARPV--------GLS
CONSENSUS/80%    h......................hthhh.RYlsWhlohPhhlh.hshhs........shs
CONSENSUS/65%    h....................thpplahsRYlsWhlosPlllltlshlu........Gss
CONSENSUS/50%    l.hth.h............tsss+plaauRYlDWhlTTPLlLlpLuLLA........Gss


348780.NP1758A_from_4_to_231R-------RK----AVGLLAVLLVTLWSALATWLT-------TGA---AESAITLLSISA
CONSENSUS/80%    h.......tp....hhhhhhhshhhhhshhhushs.......tss...h+hhhashushh
CONSENSUS/65%    h.......tp....lhhhlshshlhllsGlhuuls.......sss...h+Wsaaslusss
CONSENSUS/50%    t.......sp....lhtllssshlMIlsGLsAAls.......sus...h+WuaaulSssu


348780.NP1758A_from_4_to_231YLFGVYLLF-KPFSRVAAAAPGEAR-LLYGKLRNLFVLCWGG-LLVASAISE------QA
CONSENSUS/80%    hhhlhh.lh.h.h.t.htt.s.t....ha.hhh.hhhlhWhh.YPlsahls........G
CONSENSUS/65%    alhllhhLh.hphtpsspptsspht.phathLpshhhllWhh.YPlsWhlu.......tG
CONSENSUS/50%    alslLYhLh.sshscsAsspuscst.plFssLpslslVLWll.YPlsWulu.......-G


348780.NP1758A_from_4_to_231IGLTD-AFIGQFAASYIDLVLMLGIGGLVLFSRFVRDPTATERADATA
CONSENSUS/80%    hshhp..s...hhashlDlhshhhhshhhh.hht..t........t.s
CONSENSUS/65%    hshls.ssstslhaslLDllsKssauhlllhhtpshsttt.....sss
CONSENSUS/50%    sulls.ssupslhYulLDllAKssFuhllLtsssshsssststtsssu

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T