JC5772/1-104 VTQVHVLGAAGLKDSPT------------------------------------------- CONSENSUS/80% .h.l.lhpsptl................................................ CONSENSUS/65% hlplplhpupsL.ths............................................ CONSENSUS/50% pLplpllpAcsLsspch........................................... JC5772/1-104 -GANSYVIIKCEGD---------------------------------------------- CONSENSUS/80% ...ssas.h.h................................................. CONSENSUS/65% .hs-sYlplplhs............................................... CONSENSUS/50% tpsDPYVclplssttt............................................ JC5772/1-104 ----------------------------------------------------KVRSAVQK CONSENSUS/80% .......................................................pTphh CONSENSUS/65% .....................................................hh+Tpsh CONSENSUS/50% .....................................................pt+Tclh JC5772/1-104 GTS----------TPEYNV---KGIFYRKKL----------------------SQPITVQ CONSENSUS/80% tps..........sP.app...th.h.h..........................t.l.ht CONSENSUS/65% pps..........sPhWs-...ph.hph.........................tphlplp CONSENSUS/50% cssh.........NPpWsE...sFpFslssst.....................sspLplp JC5772/1-104 VWNHRVL----------------KDEFLGQVHLKADP---------------------DN CONSENSUS/80% lhs.p......................pp.lGth.h......................ht CONSENSUS/65% Vh-psth...................tsphlGpstls.....................lp CONSENSUS/50% VaDc-pht..................pcchlGpspls.....................ls JC5772/1-104 LQALHTLHLRD CONSENSUS/80% ph..t...... CONSENSUS/65% plhttttt.hh CONSENSUS/50% cltsssppsth
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |