CO3_CAVPO/1536 LEKACEPG----VDYVYKTKLLKMELSD-------------------------------- CONSENSUS/80% .pphCt.t......ashthplhphp.ts................................ CONSENSUS/65% hpphCpss......Yshpsplhphppps................................ CONSENSUS/50% hcKACcss....h-Yua+l+Vlsscpps................................ CO3_CAVPO/1536 ----------------------DFDEYIMTIEQVIKSG---------------SDEVQA- CONSENSUS/80% .......................h.hh.hpl.plhKps................p.h.t. CONSENSUS/65% ......................ththaphplhpllKpG...............p-ph.p. CONSENSUS/50% ......................sacpYsssIpsVlKpG...............sDcssc. CO3_CAVPO/1536 -GKERRFISHIK----CRDALHLKEGKHYLMWGLS---SDLWGER--PNMS--YIIGKDT CONSENSUS/80% .tt.h.hht..p....C.t.h.h..sppYLlhG.........t.t...t.t..hhlstpo CONSENSUS/65% .sphthhhpphp....Cppsh.h.huppYLlhG.....tphhptp...php..allsppo CONSENSUS/50% .sst+lFlschp....C+pslpLppG+pYLlMG.s...schpssc..tphp..YlLscso CO3_CAVPO/1536 WVEAWPEAEECQDEENQQQ CONSENSUS/80% hl..a.pt.ppp.pp.pth CONSENSUS/65% hlc.Wssptpsphpchppp CONSENSUS/50% WlEpWPscpcCpscchpcp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |