CAD1_CHICK/1-8 QIKSNKDK-----ESK-------VYYSITGQGADSP--------PVGIFIIERETGW--- CONSENSUS/80% h.s.D.D......tt........h.apl.tt...............t.Ftlp.tss.... CONSENSUS/65% lpApD.Dp.....sup.......lpYplhsst..............thFplstpsG.... CONSENSUS/50% lsAsDsDs....tNup.......lsYslsssst............tshFsI-ssoG.... CAD1_CHICK/1-8 ----------LEVTE---QLDREKI---------DRYTLLSHAVSASGQ----------- CONSENSUS/80% . .......hhh.....lDh-t............apl.l.s.-ts............. CONSENSUS/65% . .......lhs...t.LDtEpt.........staplhlhApDtu............. CONSENSUS/50% . ......hlpss..psLDREsp.........spYpLsVpAsDsGss........... CAD1_CHICK/1-8 -------------------------PVEDP--MEIIITVMDQNDNKP- CONSENSUS/80% .............................ts.h.l.l.l.D.N-p.P CONSENSUS/65% ............................hsspsplplplhDhNDNsP CONSENSUS/50% ............................hsussslplpVpDlNDNsP
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |