6239.F40F12.5_from_460_to_528IGDQCIW--------------------------NNNGAEERGI---IKYIG-------FL CONSENSUS/80% lGpps.l..............................t...uh...lpahG........h CONSENSUS/65% lGp+lpl..............................ssphGs...l+alG........s CONSENSUS/50% lGsRVpV.............................ssscpGs...VRYlG.......sl 6239.F40F12.5_from_460_to_528KGHK------TL---------------YAGVEFKN-TI--------------GAGTG-VF CONSENSUS/80% ..........u................ahGl-hcp.................GppsG.sh CONSENSUS/65% pht.......Gh...............WhGlEhDps................GKs-G.oh CONSENSUS/50% sht......sGh...............WlGVELD-Ps...............GKNDG.ol 6239.F40F12.5_from_460_to_528NREQ-LFLAK--------DGHAGFVELSSLE CONSENSUS/80% tGhp.YFps..........thG.Fh..pplt CONSENSUS/65% pGhp.YFpCp........sphGhFlp.splp CONSENSUS/50% sGp+.YFpCp........spaGlFV+ss+lp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |