44689.DDBDRAFT_0184190_from_33_to_120LVNHCEKVNE---WVENN--DVPYAKFNCHIT-NIG--NTPIGNVVMRLSGD-------- CONSENSUS/80% h.hppthhsp...W.pss.......phphplh.Nts..ppslpph.hh.p.......... CONSENSUS/65% lslppphsss...W.sss.....hhpapsslh.Nps..spslpshhlthssp........ CONSENSUS/50% lslsQslsso...Ws-ss...psasQaclTIp.Nsu..sssI+slsIss-ss........ 44689.DDBDRAFT_0184190_from_33_to_120-----------GKTKEVWEMET-------KDNGQTYNFPQWRQQQ-QLAF-NQSHPWGYT CONSENSUS/80% ...............plWshth........s....hthPsa.....slts.tpsapFGaI CONSENSUS/65% ..............tslWslph........sps..hslPsah....sIss.spsasFGaI CONSENSUS/50% ........ht..t.ssIWslcp.......suss.sasLPoahs...oIss.GsoaoFGYI 44689.DDBDRAFT_0184190_from_33_to_120VQGG CONSENSUS/80% ..ss CONSENSUS/65% .pss CONSENSUS/50% .pus
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |