272844.PAB2086_from_8_to_92KLKVASA-YQRD-------VGRGI-VRLDRKTMRELGISPGDVVEII----GTKNT---- CONSENSUS/80% phhV.ps..tp..........psh.shls.t.htthth..schl.lp....stp...... CONSENSUS/65% pLpVtcs.tpcD.......shpul.spls.pshppltl..GDhl.lp....Gp+tp.... CONSENSUS/50% pL+Vs-A.pscD.......sG+ul.ARlssssMccLslpsGDhVpIc....Gc+ps.... 272844.PAB2086_from_8_to_92AAIAWPAYPEDEG----LGIIRMD-----GTIRKNA--GVGLGDEV-TVRKA-EV CONSENSUS/80% hshhh.......s......hlths.....t..Rp.h..thtlsp.V.plp.h... CONSENSUS/65% suhshss.spsts.....shIphs.....shhRpsu..slslG-pV.plcts.ph CONSENSUS/50% sAllhss.sp-pu.....uhIRlD.....uhtRpNA..GVulGDpV.pV+cs.ps
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |