cef26f4_1 RRNVLLMWVQEKLELY----------------------SDQLTVSNFSSDWTDCRAFCAL CONSENSUS/80% .tpthhtWhpthht.............................htph.pshpsGhhhhtL CONSENSUS/65% tcpthhpWhppthtt.........................t.thpshtpshpDGhhLspL CONSENSUS/50% pccsllcWlppplspt........................psslssFssslpDGlsLspL cef26f4_1 LYDLFP---DTMPDVTVS--------PIVGDCISRCRRTFQLLEIPFDERALGISSPTAD CONSENSUS/80% hp.h.s...t.h................................hpphp.hhp.hpt... CONSENSUS/65% lptltP...pthsttp.......................tphpthpNlphhlphscph.. CONSENSUS/50% lcslpP...cslsppsht....................hsphpphcNlspsLssscch.. cef26f4_1 S---GADEDSSSACSVITG-------LTDWRYIMNTVFML- CONSENSUS/80% . ........htstclht... .....hthhh.l..h.. CONSENSUS/65% . ..hsph.hhpspDlhp... .tp..hsllhslhth.. CONSENSUS/50% . ..hspsshlsscDls-s.. .p+shhullhsLhph..
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |