CLH_RAT/1-147 LHIVVHADELEELINYYQ------DRGYFEELITMLEAALGLE---RAHMGMFTELAILY CONSENSUS/80% h...tt..thptllp.h.......p.t.hp.lh.hL.thht......tp.th.p.hh.h. CONSENSUS/65% l.phss.hshppllchhp......ptshhp.Lh.aLtthlpp....spp.slpstLl.hh CONSENSUS/50% lhcssctlshsclVchac......cpsphcpLlsaLpsllsps...spcsslpscLlphh CLH_RAT/1-147 SKFKPQKMREHLE-----------LFWSRVNIPKVLRAAEQAHLW-AELVFLYDK--YEE CONSENSUS/80% ...t....h.hht..............s.hsh.plhthh.ctt.h.tthh.hhtp..h.. CONSENSUS/65% hchs.pp.hthhp..............shhchpcltphs.ctphh.ppuhhlhpc..htp CONSENSUS/50% sctsppcth-hls............ppspYDhp+luchCpcssLa.cpuhhlYs+..hss CLH_RAT/1-147 YDNAIITMMNHP---TDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLN CONSENSUS/80% h.phh.hhh...........hp.hhphhhp..s.phh.thh...hph...... CONSENSUS/65% hppslphhhpp.......tphpthhchhhchssscha.plltshhchtt...s CONSENSUS/50% accAlsshlcp.......sshcphl-ahscpsss-laspllpspl-tpphpts
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |