CLUS_BOVIN NVMPFPLLEPF-NFHDVFQPFYDMIHQAQQAMDAHLQRTPYHFPTMEFTEN--------- CONSENSUS/80% slhsh..h..h.sFaphFQPFh-MIapu.puhphphpp...phP..ph..p......... CONSENSUS/65% slMPFshatsl.NFHsMFQPFF-MIHQAQQAMDspLH+sshpFPph-Fscp......... CONSENSUS/50% slMPFspapPL.NFHcMFQPFFDMIHQAQQAMDl+LH+ssapFPss-Fsc-t........ CLUS_BOVIN --NDRTVCKEIRHNSTGCLRMKDQCEKCQEILEVDCSASNPTQTLLRQQLNASLQLAEKF CONSENSUS/80% ..pDRsVC+EIR+NSoGCL+M+spC-KCpEILuVDCStssPsQ.tLRppLppuLplAE+h CONSENSUS/65% .tsDRTVCKEIRHNSTGCL+MKDQCEKCQEILSVDCSssNPuQspLRQELssSLQlAE+h CONSENSUS/50% .pcDRTVCKEIRHNSTGCLKMKDQCEKCQEILSVDCSoNNPuQspLRQELs-SLQlAE+F CLUS_BOVIN SRLYDQLLQSYQQKMLNTSALLKQLNEQFTWVSQLANLTQSDDQHYLQVFTVN-SHNSDP CONSENSUS/80% op.YspLLpuhQt+MhNTSuLLcQLNcQFsWVSpLANLTQspD.haLpVpTVs.o+sus. CONSENSUS/65% T+hYc-LLQSaQpKMLNTSSLLcQLN-QFsWVSQLANLTQu-D.aYLpVoTVs.SHsSDs CONSENSUS/50% T+pYDELLQSYQpKMLNTSSLL-QLNEQFoWVSQLANLTQG-DpaYLQVTTVs.SHoSDS CLUS_BOVIN SIPSG--LTKVIVKLFNSFPITVTVPQEVS--SPNFMENVAEKALQQYR CONSENSUS/80% phPst..hTpVsVpLFsS.PlTlhlP.tlS..sPpFM-hVAEcALQpY+ CONSENSUS/65% pVPSu..lTcVVVKLFDSpPITVslPpEVStpsPKFMETVAEKALQcYR CONSENSUS/50% -VPSG..lTcVVVKLFDS-PITVslPpEVS+cNPKFMETVAEKALQEYR
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |