CAAC010/1-97 EQTEEPVLYFREQLM---KHGKRPDDE-------KMDI--IEKIFTLMVYGSE------- CONSENSUS/80% t.h.psltaupp.ht....h.tt.............tp..lpphhshlha.......... CONSENSUS/65% tthpcAlpaupphhs...phsppp...........hpp..lpchhuLLsatp........ CONSENSUS/50% sslc-AlpYu+cplu...passcstt.........hc-..LccshuLLAasss....... CAAC010/1-97 -----ENVNRIYFEQS-------EREKTAKIVNSAMLGV-AGKSR--------QSHIDFL CONSENSUS/80% ......p.ht.hhp........ .h..hhp.hptthht...t............s.lt.h CONSENSUS/65% ....ptsshtthlp.p...... .ppplsptlspslLph..stp..........s.Lphh CONSENSUS/50% ....psushsplLsss...... pRpplucplNpslLpth.spsp........posLcpl CAAC010/1-97 AKSIIWGKNDIVSRQTP CONSENSUS/80% ht.hh.h...h.p.... CONSENSUS/65% lptthhshtphtp.t.. CONSENSUS/50% lstspsshssLpppsst
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |