349521.HCH_03646_from_78_to_170KIEIL---SNLQSDLQSV----SEIAQSSF-----KVYGDLYKSGR-------------- CONSENSUS/80% ttthh...ttpt.thpth....hp.shthh.....t.h.t..t.t............... CONSENSUS/65% ppphh...pp+ptplpph....lphAhshl.....pth.pt.ttup.............. CONSENSUS/50% csslh...ps+cspL+sh....l-sAhull.....pshtppspsGp.............. 349521.HCH_03646_from_78_to_170-----------------VSQEEAEAMAFKWL----------REVRFGE------------ CONSENSUS/80% ....................tts.t.hhthh..........tthphstt........... CONSENSUS/65% .................hsttpApptshphl..........pth+asps........... CONSENSUS/50% .................locc-ApppAtstl..........sslRauss........... 349521.HCH_03646_from_78_to_170VEVF--VFNRQG--------GVMAHPEHS--VEAT-YITSLR----------------DF CONSENSUS/80% tYha..h.s.ps........h.lhpshp.t.h.Gp.sh.th.................D. CONSENSUS/65% sYha..lhDhps........hhlhHPhpsp.h.Gp.shhshp................Ds CONSENSUS/50% sYFF..lhDtsG........shlhHPhpPc.LhGc.shtshc................Ds 349521.HCH_03646_from_78_to_170K-GRVIYQ CONSENSUS/80% p.Gh.hh. CONSENSUS/65% s.Gphhhp CONSENSUS/50% s.Gptlhp
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |