O29218/1-143 SETVQVIVFNLG-------------DERYGVDISQVREIIRPT--QITRIPN---APDFV CONSENSUS/80% .t....lshtl..............tp.hslsh.tl.-hht......p.l.t.......h CONSENSUS/65% hphh..lshtls.............pptaulsltpVtEllphp...hs.l.p.....shh CONSENSUS/50% hshppsLohsls.............ccpaulPlssVpEllchs..phoplss...sssas O29218/1-143 EGVINLRGQITTIINLRKRFGMEPKPIDN---------------NTRIIVVE-------- CONSENSUS/80% .shhthRsthlslhpltthhsh.........................hllhp........ CONSENSUS/65% tullslRupllPllcLtphhshsstp.pt...............pthllllp........ CONSENSUS/50% pGVlNlRGpllPll-Lpchlulsssssss...............pspllllc........ O29218/1-143 ---------FDNAVIGMMVDTVNEVKYLSTADIEALPNIIT-A--REEAKFLKGVGKLPD CONSENSUS/80% ..........tt..hulhl-tl.t..pls.ptht................hhtGhshhts CONSENSUS/65% .........hssphhulhVDplhs.hplshpslp............tththltGsshhss CONSENSUS/50% .........ssspplGllVDsltclpplshcslp...........tsssstlsGssplu- O29218/1-143 ------GLLIMIDLNKVL CONSENSUS/80% ......phhhllshttlh CONSENSUS/65% ......phhhllDlsplh CONSENSUS/50% s.....cllllLDlspll
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |