Consensus terms for the Cog4 domain

Q95ZC4_LEIMA/18-0MRHARATVQARLLKMIEDAVQVNDKLAIMKGTKLLAELGEGAVASQLYSDWIADHTIAAL
CONSENSUS/80%    lpphppplpthh.cphtpAhpttsh.pl.phh+lashls.tp.GlphYstalsphlt.t.
CONSENSUS/65%    LpphpppLpthhtccFpcAsctpDhtplp+aF+LFPhlGhp-.GLphYupalsphlsspu
CONSENSUS/50%    Lcchp-cLpplFp++FscAl+spDlsploRaFKLFPLlGpc-pGL-hYScYlCclIAscu


Q95ZC4_LEIMA/18-0AKLIDSEMRKME---DSATVAMTHLALVSQCLDNVAAAFESDEEFTYEAFG---AQG---
CONSENSUS/80%    .+t.hpt..t...........h.a.thhhtlhc.ls.hlptpt.ll.thau....tt...
CONSENSUS/65%    .+plhsthsttp.....t..thhausslhtLFcsluphlppcp.llpphYG...sst...
CONSENSUS/50%    .Rslhsssssss...p.sptpshYussLopLFEsluplI-sHssllcctYG...ssp...


Q95ZC4_LEIMA/18-0-------------PLALLAKLHSRATARCVPVLSDFIERRKDVLTQLEKHASAGDGASGA
CONSENSUS/80%    .............hh.hht.lpt-sD.pst.lhppa.c.+ch..tthhtphpp.t.....
CONSENSUS/65%    .............hhhlhpclQpEsDhpsshllcpa.-.R+l..pphhpplpphsh..ht
CONSENSUS/50%    .............llplls+LQcEsDsQuulIl-sFhDpR+l..cclhp-Issashsphs


Q95ZC4_LEIMA/18-0SRASTP------------------------------------------------------
CONSENSUS/80%    ............................................................
CONSENSUS/65%    tt..........................................................
CONSENSUS/50%    ts..........................................................


Q95ZC4_LEIMA/18-0--SMNAAAGANANAVVASARRADQILEEISHMVSCGHIYLTFVERKQTEYEKRMKAAGAA
CONSENSUS/80%    .................s.pclp.lltEhs.hhpphthYhpFht.ph.t...........
CONSENSUS/65%    ...........tt.ph.s.+-lstlltEhothhpphphYhcFhs.+htp...........
CONSENSUS/50%    .....thtt.tsps-tlss+-l-sllsEloslhspWslYp+Flsp+hsphs.........


Q95ZC4_LEIMA/18-0AAAESGREESTSMAAAGEVVAGSTADNLWRTSDNALLNSMQD--ILGVYVPLQTTYFTIA
CONSENSUS/80%    ......p....th.............t.hp..psthttthpc..hhs.a..h.hhah..s
CONSENSUS/65%    ..t.tsp.ptpth.............phhp..puphppplp-..lls.ah.LppaahppS
CONSENSUS/50%    ..spssscsspcl..........phssllp..cSshsp+lp-..llssalsLppaahpcS


Q95ZC4_LEIMA/18-0YDQAVDLQLRAI-----------RDAAKEAAAAAARAGGGDASRTAAGARHGNASAALLS
CONSENSUS/80%    htpulplp....................t..hoohl-Dhhhllppsl.thhsoup.t.lt
CONSENSUS/65%    lp+Alpl-phsp................s..hoShl-Dlhhll+psltpslsoushsslp
CONSENSUS/50%    lcKAlsl--hss................sshsSSlVDDlhall+psLp+sluTushssls


Q95ZC4_LEIMA/18-0TPSAATFMSGLQNLYMVAASSA---
CONSENSUS/80%    thhs..hhthltpthh.thhttphp
CONSENSUS/65%    thlst.hsphlps-ah.thhppphp
CONSENSUS/50%    uhlsp.lsplLpsDah.stlpspl+

The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:

ClassKeyResidues
alcoholoS,T
aliphaticlI,L,V
any.A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y
aromaticaF,H,W,Y
chargedcD,E,H,K,R
hydrophobichA,C,F,G,H,I,K,L,M,R,T,V,W,Y
negative-D,E
polarpC,D,E,H,K,N,Q,R,S,T
positive+H,K,R
smallsA,C,D,G,N,P,S,T,V
tinyuA,G,S
turnliketA,C,D,E,G,H,K,N,Q,R,S,T