Q330M9_from_239_to_3QTLRQRAENDDPDPHDGYSLSYVNPATGQPP-LFPTMS----FRAQLLQEE-----TDPH CONSENSUS/80% .sh.t.t.....hp.t.s.h..ht.tp.h....h..hs....hsh.hhtht..suhh..p CONSENSUS/65% hslhptp.....hssptGthp.hsspp.hsh..Lpths....lusshhslp..suhhsP+ CONSENSUS/50% hNLtsscs...hasspsGplppsssss.hPs..Lpsls....lussplslp.sGulhsPH Q330M9_from_239_to_3FHNAVD--AYFVI-EGEGATHVGDD----------------------------------- CONSENSUS/80% hpspup..hhhsh.pGpshhthhsst.................................. CONSENSUS/65% apspupp.lhhVh.pGpuhhphlssp.................................. CONSENSUS/50% asssAsc.lsaVl.cGpuplplVssst................................. Q330M9_from_239_to_3---------------VLEWSERDIFVIPPDEIH------HHD------------------ CONSENSUS/80% ............phh.tplptGphhhhPtsh.h......h..s...tt.sh.hh.hht.. CONSENSUS/65% ...........tphhptplppGslhllPtuhsh......hhhs...sspshthl.shps. CONSENSUS/50% ...........scthssclcpG-lhllPpGasa......hphss..sssshphl.sFss. Q330M9_from_239_to_3--------------PDG--EA-----------------------------------ILLG CONSENSUS/80% ts.s..........hhu.......................................hhtt CONSENSUS/65% ss.s.........hlsGt..s...................................hhpt CONSENSUS/50% ssss......tpphluGp.ps...................................llss Q330M9_from_239_to_3MTDRPVFEAFN--FYAEAEP CONSENSUS/80% h..thht.sht..hs.ttht CONSENSUS/65% hstphlttsas..lstpphp CONSENSUS/50% lsscllspuFs..lsscclc
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |