G1D5R6_9CAUD -------------------MTDDL------------------------L----------- CONSENSUS/80% ...................M.tt..................................... CONSENSUS/65% ...................Mspp..................................... CONSENSUS/50% ...................Mspshs.................................pt G1D5R6_9CAUD ---------------AEL----KDSWLM-------------------------------- CONSENSUS/80% .................h.......................................... CONSENSUS/65% .......th....s.ssl.....tpsh................................. CONSENSUS/50% .......sls.stP.sPL....hcpsu................................. G1D5R6_9CAUD ---------------------------ELRAARKSAETIRAYSGSVEGYLNFCVEG---- CONSENSUS/80% ............................hhst..s.soppshttsltthhthht.t.... CONSENSUS/65% ............................hhssthussTRcsYtpslpsahthhstt.... CONSENSUS/50% .......................ch.ppaLusppossTR+AYs+-LccFtsassps.... G1D5R6_9CAUD ---------------------------ELAPLEK------------ASLLAWVNSM---- CONSENSUS/80% ...........................t.t.................hlhthht.L.... CONSENSUS/65% ...........................phpthphs...........tplstYtstLht.. CONSENSUS/50% ...........................plcshpss...........pcVssY+ssLhp.. G1D5R6_9CAUD -----ASLQPATVHLRLTAVKQFMRWVADE--EGVNVDG---------LLVVRPPKLDQK CONSENSUS/80% .....tthtsuThpthLsAlpthhp.hh....thhshs..........h.slct.+st.. CONSENSUS/65% .....pshusuTlsppLuAL+phhphshph..phhshs..........htslcth+sss. CONSENSUS/50% .....cuLusATlNR+LuAL+uhhchuhch..chsstss.........lscl+slKsssh G1D5R6_9CAUD V--VKHLSDRAVQALVATC------------AGNTFRDRRDKALIVLFTETGIRAAEMLA CONSENSUS/80% h..stslt.pphtthhtsh............s..s.huhRDhAllhlhh.tulRtuElst CONSENSUS/65% h.pspslpspphptllpsh............spsohtGhRDtAlltlLhssuLRRuElss CONSENSUS/50% c.cscuLssc-lcsLlsss............scsThpGtRDtAlLtLLassGLRRuEllu G1D5R6_9CAUD LDVEDVSLVDC-----------------QLTVRRGKG--AKGRR---------VKYSPMC CONSENSUS/80% Lsltcht..tt.................hlplh.uKs..sptph...........hs.ts CONSENSUS/65% LsltDhchptt.................tLplh.GKG..sppch.........l.hssss CONSENSUS/50% L-VuDa-scsp.................pLpl+.GKG..sccct.........lsLssss G1D5R6_9CAUD AATIDKYL-RARRRAG----HGSEGPLWIGL--------GGRLSYTGMKS-SLKRRADDA CONSENSUS/80% htslptal.thtt..........ttsLahth.....t..tptls.pulhh.hlpthuttA CONSENSUS/65% spAlppWL.phRtp........tsuPLFhshpt...pspspRLospulhp.llcphuppA CONSENSUS/50% lcAlscWL.csRucht......ssuPLFsuls+...sssucRLospulY+.IV++pAcpA G1D5R6_9CAUD GV----------PGFHPHRLRHTSAVRWLK-AGGSEAGLMAQAGWQSRRQ-IDRYIKSAA CONSENSUS/80% Gl..........t.hssHphRpshhothh..tsss.hhstt..tHts.ph.h.hYtcptt CONSENSUS/65% Gl..........pthuPHplR+ohhTshLc.sGsDhttlpchstHps.ps.hp+Yscptp CONSENSUS/50% Gl..........cshoPHclRHoaATshL-.sGuDlcpVQ+Lu+HuShsT.sp+YD+Ruc G1D5R6_9CAUD EELASDEF-DRLNLSVE------------------------------------------- CONSENSUS/80% p.ttp.s...hls............................................... CONSENSUS/65% phptpssp..hlsh.............................................. CONSENSUS/50% ptpspssc..tlul.h............................................ G1D5R6_9CAUD ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ G1D5R6_9CAUD ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ G1D5R6_9CAUD ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ G1D5R6_9CAUD ------------------------------------------------------------ CONSENSUS/80% ............................................................ CONSENSUS/65% ............................................................ CONSENSUS/50% ............................................................ G1D5R6_9CAUD -------------------------------------- CONSENSUS/80% ...................................... CONSENSUS/65% ...................................... CONSENSUS/50% ......................................
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |