5476.CAL0003199_from_174_to_309PTLEDCLQLAIDSNNLSNNT---------TNDIENKSVRPNRKSSISSAVTAVAR----- CONSENSUS/80% ssshtalphh.ph....................................h..hs...... CONSENSUS/65% soshsFlpphhpt.t...............................s.phpphup..... CONSENSUS/50% PTPhsFLc+ah+ssp...............................stphcplAp..... 5476.CAL0003199_from_174_to_309----FLCE------LSLYD---------KYFLSV-----PPSLIAITANLLSCSMLQIPH CONSENSUS/80% ....hhhc......hshhp..........thhth......sShlAuushhhuh.hh.... CONSENSUS/65% ....alhE......lslh-.........hphlpa......PShlAAuulhhuhhhht.t. CONSENSUS/50% ....allE......LoLl-.........hsalpa.....sPShlAAAAlhlApttlptss 5476.CAL0003199_from_174_to_309ASIT-----------LKNLI---------EQEIINP----QQKKQK---KAF-----SSN CONSENSUS/80% ...............h..hsth.......p.ppl..h...ht.h.t............t. CONSENSUS/65% ...t...........ltphosh.......s.ppltss...hphlhp.....h......ps CONSENSUS/50% hs.st..........LpcaouY.......stccLpsC...sctltc.....h.....tss 5476.CAL0003199_from_174_to_309SS-------------------RTTTA-----SYTHQN---------QSDVRHSS------ CONSENSUS/80% ......................shhp.....phtt................t.t...... CONSENSUS/65% .....................pslhp.....+apppp............hhpsu...... CONSENSUS/50% spp..................pulpc.....KYsssc............htplu...... 5476.CAL0003199_from_174_to_309FDEDI CONSENSUS/80% .h... CONSENSUS/65% hhs.. CONSENSUS/50% phsss
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |