cek06a1_6 PLLVFVNPKSGGNKGS-------KALHTLCWLLNPRQVFDITS-LKGPKFGLEM-FRKVV CONSENSUS/80% shllhhNspuGttps........thhttht.hls.hplhth.t..tt.t.thth.htph. CONSENSUS/65% sllVhlNs+SGsppup.......phltphphhLsstpVhsltp..tssthulph.hpcls CONSENSUS/50% PLLValNPKSGuspGs.......cllp+applLNPpQVa-lsp..sGPctuLch.apcls cek06a1_6 TQL---------RILVCGGDGTVGWVLSTLDNLNWPA------------YPPMAIMPLGT CONSENSUS/80% ............tlhssGGDGsht.llpsh.php.................slullPhGo CONSENSUS/65% ph..........pllssGGDGTlshllssltphph................slullPhGT CONSENSUS/50% sh..........+VLlCGGDGTVGWVLsul-ptshtst............PPVAlLPLGT cek06a1_6 GNDLARCMGWGGVFSD-------EPISQLMQAILHETIVTHLDRW CONSENSUS/80% uNshutslthsts.tt.......t..h.hh.ph..tsp..hhppa CONSENSUS/65% GNchucslthusshss.......ps.hthhtphh.pupsshh-+W CONSENSUS/50% GNDLARsLsWGsGhss.......-shlphlpclh.cussshlDRW
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |