278197.PEPE_0956_from_182_to_309GLEMLKAGTD-LSS-KSELELVDGDAKSFDMGGKTI-------RIGQVNTVDLDDVFSR- CONSENSUS/80% h.phhtstts.lts.hs.tpll.hDhKtaphss.ph.......tlupl.hh....h.th. CONSENSUS/65% uhphhcAtss.lss.hohp-llppDhKpFshsuppl.......sluQlpssshtthhpp. CONSENSUS/50% up-Mh+Apos.luu.tosc-LlpcDhKsFshsGpcl.......uIuQlsslDhsplhs+. 278197.PEPE_0956_from_182_to_309--EAALVKTME-EENQKNGYDMFLLLATNILSS----DSRLL-------VVGEPKDI--V CONSENSUS/80% ...tth.ttht.thhtttthphhhhhhssh.pp....tp.hh.......hhs...t...h CONSENSUS/65% ..psplhsthp.phtpppshchhllhhTslhpp....sopll.......shupptph..h CONSENSUS/50% ..cc-lpsslc.chppccuhDlllLllTDIhcc....sScLL.......lhGsssst..l 278197.PEPE_0956_from_182_to_309EKAFNTELSDHNT-------------------------------ADLPGVVSRKKQVVPP CONSENSUS/80% .thh..t..t..................................h...sshup+KQllP. CONSENSUS/65% tpsashphtsst................................hhltslhSRKKQllP. CONSENSUS/50% pcAFstshssss................................hhLsGVlSRKKQVVPs 278197.PEPE_0956_from_182_to_309LMDAF CONSENSUS/80% ltphh CONSENSUS/65% Lppsh CONSENSUS/50% Lpcul
The grouping of amino acids to classes and class abbreviation (the key) used within consensus sequences are shown below:
| Class | Key | Residues |
|---|---|---|
| alcohol | o | S,T |
| aliphatic | l | I,L,V |
| any | . | A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y |
| aromatic | a | F,H,W,Y |
| charged | c | D,E,H,K,R |
| hydrophobic | h | A,C,F,G,H,I,K,L,M,R,T,V,W,Y |
| negative | - | D,E |
| polar | p | C,D,E,H,K,N,Q,R,S,T |
| positive | + | H,K,R |
| small | s | A,C,D,G,N,P,S,T,V |
| tiny | u | A,G,S |
| turnlike | t | A,C,D,E,G,H,K,N,Q,R,S,T |